| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2859 |
|---|
| Symbol | |
|---|
| ID | 5745133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 3508472 |
|---|
| End bp | 3509422 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 641293961 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001559958 |
|---|
| Protein GI | 160880990 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000554172 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAACAA CTACATTTGG AGCTTTATTA AAAGAAATTA GAAAAACAAA TAATATGACA
CAAGTAGAAA CATGTAAAGA TATCTGCTCT TTAAGACAAT ATGTGAGAAT TGAAAATAAT
ACTTCAGAAC CTTCGATGTA CCTAGTTCAG CTGCTTTCCC ATCGTTTAAA TTATGACCTT
ATTGCTTATT ATAAACTTAT ATACTGCGAT CAAACATTGC AAGCAAATAC AATAAAAACT
GAAGCAGATG TCTTAATTAA AGGTGGTCAG TATGATGATT TAGAGAAACT TATAAACAGA
TTTGAAAATT ACCCTGAATT TAAAAAGGGT GAAAATCTTC AGTTCATATA CTATTATAAG
TCGTTATGTG CCCACAGCAA AAAAGATTAT AACCAAGCGG TACAGTATTG TATTAATGGA
TTACATATTG AAGATCCAAG TTTTAGTAAA AATCGATTAT ATGGTAAAAT CAGCTCAAGT
ATTGGTTTGA ATTTATATCA TAATCTTGGG TGTTATCTAA ATGAATTAGG AAAATTGGAT
TTATCTATTG ATATATGGAA TAAGATATTA ATCGACATCG AAAAGAAAGT AGCATTAAAC
TTTTCTTATT ATCAATCCTC AATAGAATTT GTAAAACAAC TATATTTATC AACTTCCTAT
AATATGGGTA CACAAAAAAC TATATTAAAG GAGTATAGAA TGGCTCTAAG TTATTTTGAT
AAAGGAATTG TATTTGCAAA TAAGCATAAT TGCTCCTATT ATTTAACTAA TATAGTTAGG
CAAAAAATGC GTGTATTATA TACACTCAAT AGATATGAAG AAGCAAGGGC CTCTTACGAC
ATCTGTATGG GGCTATACTT ATTACAGGGA GATACTAAGG AATTAAGAAG CTGTGAGCAA
ATTATGAAGG AAGATTATCC AGAGTTATTA AAAATAAAAA TGTATGACTA G
|
|---|
| Protein sequence | MITTTFGALL KEIRKTNNMT QVETCKDICS LRQYVRIENN TSEPSMYLVQ LLSHRLNYDL
IAYYKLIYCD QTLQANTIKT EADVLIKGGQ YDDLEKLINR FENYPEFKKG ENLQFIYYYK
SLCAHSKKDY NQAVQYCING LHIEDPSFSK NRLYGKISSS IGLNLYHNLG CYLNELGKLD
LSIDIWNKIL IDIEKKVALN FSYYQSSIEF VKQLYLSTSY NMGTQKTILK EYRMALSYFD
KGIVFANKHN CSYYLTNIVR QKMRVLYTLN RYEEARASYD ICMGLYLLQG DTKELRSCEQ
IMKEDYPELL KIKMYD
|
|---|
| |