| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2789 |
|---|
| Symbol | |
|---|
| ID | 5742104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3394840 |
|---|
| End bp | 3395880 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641293880 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001559888 |
|---|
| Protein GI | 160880920 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATTA CTAATGGCCA TCTATATAAT ATAGTAAAGG ATGTTAATAA AGTGAGAGAA
ATCACCATAG TACAAAATGA GGCAGGTCAA AGACTGGATA AGTTCTTAGC AAAATATCTT
AATAAAGCGC CTAAGAGTTT TTTTTATAAA ATGCTTCGAA AGAAAAATAT TACCTTGAAT
GGAAAAAAGG CAGAAGGAGC AGAAAAACTT ATAGAGGGGG ATATCGTTCG TCTTTTCCTA
GCAGAGGAGA CAATAGAAAG CTTCAAAGAA TCTTATCAGC TTGATGCTAA GGTGAATCAA
AGAGCTGTAA AACTAGATGT TTTATACGAA GATTCTCATG TAGTTATTAT TAATAAACCG
ATTGGTATGT TATCACAACG TGCAAAAGAA TCCGATGTAT CATTGGTTGA GCTATTAATT
GCTTATCTTT TAGAGATGGG GAGTTTGACA AAAGAGGAGT TATCGACATT TAAACCATCG
GTATGCAATC GATTAGACCG AAATACCAGC GGGATAGTAA TTGCCGGTAA AAGCTTACTA
GGACTTCAGG AGATGTCAGC AAAGCTACAG GATCGTAGTC TTCATAAATA TTATCGCTGT
ATTGTCAAAG GAACGATGAC TAAGGGTGCT CGAATCAATG GATATCTGGC TAAAGACGAG
AAGACGAATA AAGTAAGGAT TACTACGAAT GATCCTAACG ATGGTGAAAG TTCCTACATT
GAGACTGAAT ATCAACCGAT ATTAAGTAAG AACGGATATA CACTCTTAGA GGTATTATTA
ATCACCGGTA AGACTCATCA GATTCGTGCT CACTTAAGTA GCATTGGGCA TCCGATTATT
GGTGATACGA AATATGGTGA TGAAACGCTG AATAAAAAAA TGCAAAAACA GTATGGCTTA
AGTCATCAGT TACTTCACTC TTACCGATTA GAGTTTCCTA ATCTTCCTAA AGAGCTAGAG
AAATTAAGTA ATCAAAAGAT AATAGCACCA TATCCTAAAT TATTCAAAAA CTTAGAGAAA
AGTTTATTTA GCGATAACTA G
|
|---|
| Protein sequence | MPITNGHLYN IVKDVNKVRE ITIVQNEAGQ RLDKFLAKYL NKAPKSFFYK MLRKKNITLN
GKKAEGAEKL IEGDIVRLFL AEETIESFKE SYQLDAKVNQ RAVKLDVLYE DSHVVIINKP
IGMLSQRAKE SDVSLVELLI AYLLEMGSLT KEELSTFKPS VCNRLDRNTS GIVIAGKSLL
GLQEMSAKLQ DRSLHKYYRC IVKGTMTKGA RINGYLAKDE KTNKVRITTN DPNDGESSYI
ETEYQPILSK NGYTLLEVLL ITGKTHQIRA HLSSIGHPII GDTKYGDETL NKKMQKQYGL
SHQLLHSYRL EFPNLPKELE KLSNQKIIAP YPKLFKNLEK SLFSDN
|
|---|
| |