| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2788 |
|---|
| Symbol | |
|---|
| ID | 5742103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3394280 |
|---|
| End bp | 3394816 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641293879 |
|---|
| Product | recombination protein U |
|---|
| Protein accession | YP_001559887 |
|---|
| Protein GI | 160880919 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3331] Penicillin-binding protein-related factor A, putative recombinase |
|---|
| TIGRFAM ID | [TIGR00648] recombination protein U |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCATCAT GGAATTCGAG AGGGCTTCGT GGATCTGCGC TAGAAGAGTT AATTAATCTG
ACATTAGAGA AATATCGTGA GAATCAATTA GCGTTAATTC AAAAGGTACC AACTCCGATT
ACACCAATTC AGATTGATAA AGAAAAACGT CATATAACAC TTGCTTATTT TGAACAAAAA
AGTACAGTCG ATTATATTGG AGCGGTTCAG GGAATACCGG TTTGTTTTGA TGCGAAGGAA
TGTGCGGTGG ATACTTTTTC CCTGCAAAAT ATCCATGAAC ATCAGGTGAA GTTTATGGAG
GACTTTGAAC TACAAGGTGG AATCTCTTTT ATTTTAATTT ATTTTTCAAA AAAAGATGAA
TTCTATTATT TACGTTTTGG GGAACTTATG GGATTTTGGA ATCGAAAGCT ATCTGGAGGA
AGGAAGAGTT TCCGAAAAGA GGAGCTTTGC GAGGATTTTT ATATGAGAAG ACATAGTGGA
GTATTCGTTC CATTTTTAGA GCTGTTACAA AAAGATTTGT TGGAAAGAGA GGATTAA
|
|---|
| Protein sequence | MPSWNSRGLR GSALEELINL TLEKYRENQL ALIQKVPTPI TPIQIDKEKR HITLAYFEQK
STVDYIGAVQ GIPVCFDAKE CAVDTFSLQN IHEHQVKFME DFELQGGISF ILIYFSKKDE
FYYLRFGELM GFWNRKLSGG RKSFRKEELC EDFYMRRHSG VFVPFLELLQ KDLLERED
|
|---|
| |