Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_2511 |
Symbol | |
ID | 5742582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | - |
Start bp | 3083993 |
End bp | 3085870 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 641293601 |
Product | deoxyxylulose-5-phosphate synthase |
Protein accession | YP_001559611 |
Protein GI | 160880643 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.465086 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCAAAGA TACTGGATGA AATAAATCAA CCAAATGACA TTAAAAAAAT AAGTGCAAAA AAGTATACCC AGCTGGCAGC AGAAATCAGA AGGTTTTTAA TCGCAAATGT GAGTAAAACG GGAGGACATC TTGCATCAAA TTTAGGTGTT GTTGAACTTA CAATGGCGCT TCACTTGTTT TTGGATTTTC CAGAGGATAA GCTTGTATGG GATGTTGGCC ATCAAGCATA TGTTCATAAA TTATTAACAG GAAGAAAGAA TGACTTTAAG ACATTACGTC AATATGAAGG AATGAGTGGA TTTCCAAAAC GTAAGGAGAG CGATTGTGAT GCATTTGACA CTGGACATAG CTCTACGTCT CTTTCTGTTG CAGTAGGTTT AGTTAAGGCA AGGGAGCTTT CTGAGGAACA GCGCAAAGTG GTTGCTGTAA TTGGTGATGG GGCCCTTTCT GGTGGTATGG CATTTGAGGC ACTGAATAAT GCTGGCCGAT TAAAAGAAAA CATGATTATC GTATTAAATG ATAATAATAT GTCCATATCA GAAAATGTTG GTGGGATGTC AAACTATTTA GGTAAGGCGA GGACAAATTA CCGATACATG GATTTTAAAG GTGGCTTAGA GACAGCCTTA AAGAAAATTC CGAAGGTTGG CGATGCAATT GTTACAACAT TAAAACAATC GAAAGATTCC CTAAAGCATC TGTTTATTCC AGGAATGTTA TTTGAAGATA TGGGAATGAC GTACATTGGG CCAATTGATG GTCATAATAT CAATCAAATG TTAACAGCAC TGAAGTCTGC ATCCAGAGTG AATGGTGCTG TATTAATCCA TACGGTAACA AAAAAAGGAA AGGGATACGA ACCTGCGGAA AAAGAGCCAA GCAAATATCA TGGTGTAGAA CCATTTGATA TTAAAACAGG GAAAAAACTT AAAATAAATT CCGAAGTTTC TTATACTGAA GTCTTTGGTA AGAAGTTAAT AGAGCTTGCT AAAGTCCGTA ATGATGTGGT AGCAATAACA GCTGCGATGC CAGACGGTAC TGGTTTAACC GCATTTGGAG ATGTATTCCC AAATCGATTT TTTGATGTTG GAATTGCAGA AGAACATGCC GTAACTTTTG CGGCAGGATT AGCAGCAGCA GGGTTTAAAC CAGTAGTTGC TGTATACTCT ACATTTTTAC AGCGAGCTTA TGATCAGATA CTTCATGATG TATGCGTTGG TAAGTTACCA GTTGTTTTTG CACTAGATCG CGCAGGAATT GTAGGAAATG ATGGAGAAAC TCACCAAGGT ATGTTTGATT TATCGTATCT ATCCCATATG CCAGGGCTTA CGGTAATTGC ACCTAAGAAT TCATGGGAAT TTGAACGGAT GTTAGAATAT TGTATTGATT TTGATGGTCC GATTGCAATC AGATATCCAA AAAATACAGC GTATCTAGGG TTAGAAGATC ATAAAAAAGA AATAATCTAT GGAAAGGGTG AGTTAATCGC TTCCGAAGAA GAAATCGCTC TTATTGCCAT TGGTAGTATG GTGGAAACCG CTGTTTTAGT AAGGGAGCAT TTGCATAAAC TTGGGCTTAA GGCAACTTTA GTTAATGCAA GATTTATCTC TCCATTGGAT GAAGAGATGC TTCATCAACT AACGAAATCG CATACTTTAT TTGTGACGAT GGAGGAGAAT GTTAAGCGCG GCGGATTTGG AGAAGAAGTA TCGGTGTTCT TATGTGAGCA TGATTATCAA GGAATAAAGC ACCTTAATAT TTCCATACCG AATATGTTTG TAGAGCATGG AGATCGTACG CTTTTAAAAG AAAAATTAGG GCTTGATGCA GAATCCATTG TAGATAAAAT TTGTAGACAA AGAGGGATGC AGAAATGA
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Protein sequence | MPKILDEINQ PNDIKKISAK KYTQLAAEIR RFLIANVSKT GGHLASNLGV VELTMALHLF LDFPEDKLVW DVGHQAYVHK LLTGRKNDFK TLRQYEGMSG FPKRKESDCD AFDTGHSSTS LSVAVGLVKA RELSEEQRKV VAVIGDGALS GGMAFEALNN AGRLKENMII VLNDNNMSIS ENVGGMSNYL GKARTNYRYM DFKGGLETAL KKIPKVGDAI VTTLKQSKDS LKHLFIPGML FEDMGMTYIG PIDGHNINQM LTALKSASRV NGAVLIHTVT KKGKGYEPAE KEPSKYHGVE PFDIKTGKKL KINSEVSYTE VFGKKLIELA KVRNDVVAIT AAMPDGTGLT AFGDVFPNRF FDVGIAEEHA VTFAAGLAAA GFKPVVAVYS TFLQRAYDQI LHDVCVGKLP VVFALDRAGI VGNDGETHQG MFDLSYLSHM PGLTVIAPKN SWEFERMLEY CIDFDGPIAI RYPKNTAYLG LEDHKKEIIY GKGELIASEE EIALIAIGSM VETAVLVREH LHKLGLKATL VNARFISPLD EEMLHQLTKS HTLFVTMEEN VKRGGFGEEV SVFLCEHDYQ GIKHLNISIP NMFVEHGDRT LLKEKLGLDA ESIVDKICRQ RGMQK
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