| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2404 |
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| Symbol | |
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| ID | 5742474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 2959258 |
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| End bp | 2960580 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 641293494 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001559504 |
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| Protein GI | 160880536 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000448098 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACAAT TAGATTTAAA GAAGGATTCA ACGAGAAAGT TATTTTTCCG CTATTTATTA
CCATCAATAA GTGCGACATT AGTTACTTCA ATTTATATTC TCGCTGATTC TATTATGATA
GGTAAAGGAG TAGGTCCAGA AGGAATCGCT GCTCTAAATA TCGTGTTACC ACTTTTTACG
CTATTTTTTG GTACCGGTTT ATTATTTGGA GTTGGCGGTT CGGTTTTAAT GTCAATTGCA
AATGGAAGTA ACGATTCGTT ACTTGGAAAG CAGTATTTTA CGACCTCGGT ATTATCGGTA
ACTTTTATAT CCATATTTCT ATTGATTATC ATGCAACTTG GGTTTAAACC GATCTTATAT
TTCTTAGGAG CTACCGATGT AACATTTACA CTCGCTAGTG AGTATGGAAG AACATTAGTG
GCGGGTGCTC CTGTTTTTAT GTTTTCTGCT TTGCTTCAAG CTTTTATACG AAATGATAAA
GACCCTAATT TATCGATGAT TGGTGTAATT ACAGGTGGTG TTACTAATAT CATCTTAGAC
TATATCTTTA TCTATATATT TCACTGGGGA ATGTTCGGCG GAGCAATCGC TACAGTAATC
GGAAGTTCGA TTACTTGCTT GATCTTGATA GTTCATTTTT TTAAGAAAAC AAATCAGTTA
AAGCTAGTAA AGAATGGATT TTCGATGAAA CGATTTTCTA AAGTAGTAAC CAGTGGACTA
GCCAGCTTTT TAATTGAAAT CTCGAATGGT ATTGTTACAT TCCTCTTTAA TATTCAACTT
GTAAAATACA TTGGAGACAT CGGTATCACT GTTTATAGTA TTATTGCAAA CAGTTCTTTT
ATTGTGATGT CCTTAGCAAA TGGTGTTGCG CAGGCATCAC AGCCTATACT TGCAATTAAC
TTTGGAGCAG GGGAAAGAAA GCGTGTAGAT GAAGTTAAGC ACTTAGGGTT TATTACAACT
ACAATAATTG GATCAATTAT CGTTGCGCTA GGTGCCTTAT TCCCAGGAGT TATTACAGGA
TTGTTTGTAC ATGCAACAGA TGAAATATTG TCATTAGCAA TTCCTGCCAT TAGAATGTAT
ATTTTAGCAT TCTTATTTAT GAACCTGAAT ATTTTTATAA GCGGTTATTT CCAAGCAGTA
ATGAAGCCAC AATACGCAAT GGGGGTCAAT CTTTTACGAG GTTTAATATT AGGCAGTGCA
TTTGTATTAA TCTTGCCATT GTTTATAGGA GCAAATGGTA TCTGGATTTC GATGCCTATT
GTAGAAACAA TTTCATTTGC AGTTGCTTTG GCTTTAAATT ATAAAATGAA AAAAGTAATA
TAA
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| Protein sequence | MKQLDLKKDS TRKLFFRYLL PSISATLVTS IYILADSIMI GKGVGPEGIA ALNIVLPLFT
LFFGTGLLFG VGGSVLMSIA NGSNDSLLGK QYFTTSVLSV TFISIFLLII MQLGFKPILY
FLGATDVTFT LASEYGRTLV AGAPVFMFSA LLQAFIRNDK DPNLSMIGVI TGGVTNIILD
YIFIYIFHWG MFGGAIATVI GSSITCLILI VHFFKKTNQL KLVKNGFSMK RFSKVVTSGL
ASFLIEISNG IVTFLFNIQL VKYIGDIGIT VYSIIANSSF IVMSLANGVA QASQPILAIN
FGAGERKRVD EVKHLGFITT TIIGSIIVAL GALFPGVITG LFVHATDEIL SLAIPAIRMY
ILAFLFMNLN IFISGYFQAV MKPQYAMGVN LLRGLILGSA FVLILPLFIG ANGIWISMPI
VETISFAVAL ALNYKMKKVI
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