| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2358 |
|---|
| Symbol | |
|---|
| ID | 5745417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 2910893 |
|---|
| End bp | 2911996 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641293448 |
|---|
| Product | 3-dehydroquinate synthase |
|---|
| Protein accession | YP_001559458 |
|---|
| Protein GI | 160880490 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0216034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGATT TGTACGATCG ATTGGAAGTA AAGTATGATG AGAAACCTTG CTATGATATT
GTTCTAAAAG AGTCTTTTCA GGACTTAATA GAAGAAATCA ATGCTTTTGA GTTAAAAAAT
AGAAAAATAT GTATCGTTAC AGACAGTAAT GTCGGTCTTT ATTATCTTAA ACAATTAGAG
GAGCTTTTAC TTGGGGTTCC TGGTAAGGTG GTATCCTTTG TTTTCCCAGC AGGTGAGGAC
AATAAGAATC TTGAGACTGT ACAGAATTTA TATGAGTATT TAATCAGAGA GAGTTTTGAC
CGCAATGATG TTTTATTAGC ACTTGGCGGT GGTGTAGTAG GAGATTTGAC TGGTTATACT
GCAGCAACTT ATCTAAGAGG AATAAGGTTC TTACAGGTAC CTACTTCTCT TTTGGCAATG
GTTGATTCCA GTATTGGAGG AAAAACTGGA GTTGATTTTA AAGCCTATAA GAATATGGTA
GGAGCATTTC ATATGCCTTC CTGTGTTTAT ATGAATTTAG AATGCCTTAA AACATTAGAG
GAGCGAATTT TTCTTTCAGG TATGGGAGAG ATAATAAAGC ATGGATTAAT TCAGGATAAG
GCTTACTATG AATGGCTAAA AGATAATAAG GATGCAATTG TAGCAAAAGA CATCGCGGTA
CTACGAAAAA TGGTTGGTCG AAGCTGCGAG ATAAAACGTG CAGTGGTAGA AATTGATCCT
CATGAACATA ACGAAAGAGC ATGGCTTAAC TTTGGACACA CCATTGGACA TGCAGTTGAA
AAATGGATGG AATTTACCTT ATTACATGGA GAATGTGTGG CAATTGGTAT GTCTGCAGCA
ATCTTTCTTT CCTATGAAAG AGGATACTTA ACGAAAGAAG AACATGAGGA TATCTTATCC
ACTATAGAGG CATTCAAACT ACCAATCAGA GTGCAAAAAT TAGAGATAGC AAATATTTTA
GAAGCATTAA GCCGTGATAA AAAAATGGAT GCAGGTCAAA TAAAATTTAT ACTATTACGT
AGCATTGGAG AGGCATTCAT TGATACAACA ATAACGAAGA AAGAGCTTAT TAGGGCAATT
GAGTTCATTA TGGAAGAAAG GTAA
|
|---|
| Protein sequence | MLDLYDRLEV KYDEKPCYDI VLKESFQDLI EEINAFELKN RKICIVTDSN VGLYYLKQLE
ELLLGVPGKV VSFVFPAGED NKNLETVQNL YEYLIRESFD RNDVLLALGG GVVGDLTGYT
AATYLRGIRF LQVPTSLLAM VDSSIGGKTG VDFKAYKNMV GAFHMPSCVY MNLECLKTLE
ERIFLSGMGE IIKHGLIQDK AYYEWLKDNK DAIVAKDIAV LRKMVGRSCE IKRAVVEIDP
HEHNERAWLN FGHTIGHAVE KWMEFTLLHG ECVAIGMSAA IFLSYERGYL TKEEHEDILS
TIEAFKLPIR VQKLEIANIL EALSRDKKMD AGQIKFILLR SIGEAFIDTT ITKKELIRAI
EFIMEER
|
|---|
| |