Gene Cphy_2078 details

Gene Information

• Locus tag: Cphy_2078
• ID: 5744084
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 2562731
• End bp: 2563414
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 641293175
• Product: ABC transporter related
• Protein accession: YP_001559185
• Protein GI: 160880217
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.106777
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAAATAT TACGTGTTGA TAATCTAACA AAAACATATG GAGAAGGAAA TAATAAAGTG 
AATGCCTTAG ACGGCGTTTC CTTTCGAGTA AACCAAGGTG AGTTTGTTGC TATTATAGGG 
CCTTCCGGTT CTGGTAAATC AACGTTGCTG CATATGATTG GTGGTGTAGA CCAACCATCG 
CAGGGAAAAG TGTTTGTAAA TGGAAAGGAT GTTTACAATC AAACGGAAGA GCAGTTGGCA 
ATCTTTCGTA GGAGAGAAGT CGGGTTAATC TATCAATTCT ATAACTTGAT ACCAGTAATG 
AATGTGGTTG AAAATATAAC ACTTCCGGTG CTTATGGATG GCAGAAAAGT AAACGAAGAC 
AGATTATCAG AGCTTCTTAC CGTTCTAAAT TTAAACGGCA GGGAAGGTCA TTTGCCAAAT 
CAGTTATCTG GAGGTCAGCA ACAAAGAGTG TCGATTGGAA GAGCATTAAT GAATGCACCT 
TCTATCGTAT TAGCAGATGA ACCAACTGGT AATTTAGATT CAAAAAACAG TCAAGAAATC 
ATCGAATTGC TAAAGTTATC AAATAAAAAG TACAATCAGA CCTTGTTAGT CATCACTCAT 
GATGAGAATA TAGCACTTCA AGCAGATCGA ATCATCGCAA TCGGAGACGG AAAAATCACG 
AGAGACGAGG TGATTCGTCG ATGA 

 

Protein sequence

MEILRVDNLT KTYGEGNNKV NALDGVSFRV NQGEFVAIIG PSGSGKSTLL HMIGGVDQPS 
QGKVFVNGKD VYNQTEEQLA IFRRREVGLI YQFYNLIPVM NVVENITLPV LMDGRKVNED 
RLSELLTVLN LNGREGHLPN QLSGGQQQRV SIGRALMNAP SIVLADEPTG NLDSKNSQEI 
IELLKLSNKK YNQTLLVITH DENIALQADR IIAIGDGKIT RDEVIRR