Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_2025 |
Symbol | |
ID | 5743053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 2500417 |
End bp | 2502339 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 641293122 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001559132 |
Protein GI | 160880164 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00409776 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGCAG ATTTAACATG GTTGGATAAC CCAGAAGTGT TTCGTGTCAA TCAGTTAGCA GCTCACAGTG ATCACCCTTT TTACAAGAGT AAGGAGGAGA TGGAACTAAG TACTTCCGAG GTTCCCTTTA GTCAGAATTT TACCGAGAAA AACTCCTTAC TACAATCGTT AAATGGTACG TGGCAGTTTC GATATTCTGT GAGTGCAAAA GAAAGACCAG AGTATTTTTA TCAAGAAGAT TTTATCGGAA GCGACTTCGA TGAAATTGCG GTTCCATGTC ATATTGAGTT AGCAGGTTAT GATAAAATAC ATTATATTAA TACGATGTAT CCATGGGAAG GCCATTACTA TCGAAGACCG GCGTATTGTT TAGGAAATGA TAGTTTGAGA GGAACCTTTA GTGAGGCTTC TTATAATCCG GTTGGATCTT ATCGGAAACG CTTTGATATA GAGAAAGGCT TACTTGGAAA AAGAGTGTGC ATAAGTTTTG AAGGCGTAGA ACAAGCAATG TATATCTGGT TAAATGGGCA ATTTATTGGT TATGCAGAAG ATAGTTTTAC CCCTTCCGAA TTTGATTTAA CACCTTACAT AAAGGAAAAA GATAATATTT TAGCGGTAGA AGTTCATAAA AGAAGTACGG CCGCTTTTCT TGAAGATCAG GATTTCTTCC GATTCTTTGG TATCTTTCGA AATGTTACCT TGTATGCAAA ACCTGAGATA CATATTGAAG ATATGTGGGT TAAACCACAA TTAAATGAAG ATAACTCTTC AGGAAAACTT GGACTTGAGT TAAAGATATC GAATCGGATT GAATTAGGGA CGATAACACT TAAGGTTCAA GATGATAATC ATAAAATTAT ACTTGAAAAA AGCATAGAAG CGAAAGAAAA AGTTAGTTAT GAATCAAATG TAATAGAGAA TATTATTCCT TGGTCATATA AAAATCCATA TTTATATACG GTAAATCTTG AAGTATATGA TAACAGTGGA TGCTTAGTTG AAATTGTACC ATATAGAATA GGATTTCGAA GGATTGAAAT CAAGGATAAA CTTATACTTC TCAATGGAAA ACGACTAATA ATTAATGGTG TGAACCGCCA TGAGTGGAGT CAGACCAGTG GAAGATGTAT TAATTTATCT GATATGCAGA CAGATATGAA ACTGATTCTT CAAAATAATA TTAATGCTGT TCGTACCAGC CATTATCCAA ATCAGATACC TTGGTATTAT CTTTGTGATG TTAGTGGCAT CTATGTCATG TCTGAGACGA ACTTAGAATC TCATGGCTCA TGGCAAAAGT TGGGAGCTAT AGAACCTTCT TGGAATATGC CGGGTAGTAT TCTACAGTGG AAAGAAGCCG TAGTTGACCG TGCGAGAACT AATTTTGAAA CCTTTAAGAA TCATACCTCA ATACTATTTT GGTCCCTAGG GAATGAATCC TATGCAGGAG ATAATATCGA GAGTATGAAT CAATTCTTTA AAGAAAATGA TGCTAGTAGA CTTGTACATT ATGAAGGAGT AGTGAATAAC AGAGCTTATG AATCTACTAT ATCCGATGTA GAGAGCCGTA TGTATGCGTC TTCTAAACAA ATAGAAGAAT ATTTGGAATC AGATCCAGCA AAACCTTTTA TTTTATGCGA ATATATGCAT GATATGGGAA ATTCTTTGGG TGGGCTGAAA TCATATATTG ACTTGATACC TCGTTATGAG ATGTATCAAG GTGGATTTAT TTGGGATTTT ATCGATCAAG CATTATTAGT AAAGGATGAG ATATCAGGTG AGATGGTACT TCGATACGGA GGAGACTTCG ATGACAGACC TTCTGACTAT GAATTCTCAG GAGATGGAAT CGTATTTGCA GATAGAACAG AAAAACCATC AGTACAGGAG GTGAAATATT ACTATGGATT GTATCAATCA TAA
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Protein sequence | MKADLTWLDN PEVFRVNQLA AHSDHPFYKS KEEMELSTSE VPFSQNFTEK NSLLQSLNGT WQFRYSVSAK ERPEYFYQED FIGSDFDEIA VPCHIELAGY DKIHYINTMY PWEGHYYRRP AYCLGNDSLR GTFSEASYNP VGSYRKRFDI EKGLLGKRVC ISFEGVEQAM YIWLNGQFIG YAEDSFTPSE FDLTPYIKEK DNILAVEVHK RSTAAFLEDQ DFFRFFGIFR NVTLYAKPEI HIEDMWVKPQ LNEDNSSGKL GLELKISNRI ELGTITLKVQ DDNHKIILEK SIEAKEKVSY ESNVIENIIP WSYKNPYLYT VNLEVYDNSG CLVEIVPYRI GFRRIEIKDK LILLNGKRLI INGVNRHEWS QTSGRCINLS DMQTDMKLIL QNNINAVRTS HYPNQIPWYY LCDVSGIYVM SETNLESHGS WQKLGAIEPS WNMPGSILQW KEAVVDRART NFETFKNHTS ILFWSLGNES YAGDNIESMN QFFKENDASR LVHYEGVVNN RAYESTISDV ESRMYASSKQ IEEYLESDPA KPFILCEYMH DMGNSLGGLK SYIDLIPRYE MYQGGFIWDF IDQALLVKDE ISGEMVLRYG GDFDDRPSDY EFSGDGIVFA DRTEKPSVQE VKYYYGLYQS
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