Gene Cphy_1977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_1977 
Symbol 
ID5744657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand- 
Start bp2441154 
End bp2441819 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content33% 
IMG OID641293074 
ProductABC transporter related 
Protein accessionYP_001559084 
Protein GI160880116 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.00231663 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATTT TAGAGCTTAA AAATGTTTGC TACAAATATG AGGGAACAAG TAAAAATGTT 
TTATCAAATA TCAATCTCAG CTTTGAACAA GGAAATCTAT ATGCAATTAT GGGAAAATCG 
GGTTCTGGAA AGACCACTCT ACTATCCATA ATTTCAGGAT TAGATTTAGC CACAAGCGGT 
GAGGTTTTAT GGAATGGAAA AAGTTTAAAA GAAATCAATC GTGATGACTA TAGAGCAAAA 
GGAATAGGGG TTATTTTTCA AGGTTATAAC CTTTTAACAA ATGCAACTGT ACTTGAAAAC 
ATCATACTTT CCATGAACAT TAGCGAAAGT AAAGAAAAAA ATAAAAAGCA ATTTGCACTT 
GATATTCTAT CCAGAGTTTC TATAGATGAA GAAAAAGCAA ACCGTAAAAC TTTAAAGCTT 
AGTGGTGGTG AACAACAACG TGTAGGTATT GCAAGAGCTT TGTCACACGA TCCAGATATT 
ATTATTGCTG ATGAACCAAC CGGAAATTTG GACACAGATA CCGAAGAAAG CATTATGGAG 
ATTTTAAAAG ATCTTGCCCA TAACCAAAAT AAATGCGTTA TTGTTGTAAC TCATTCCAAA 
AATGTTGCGA CCTACGCAGA TGAAGTTTTG GGTCTATCAC ATGGGAATTT AGTAAATGAT 
AAGTAG
 
Protein sequence
MSILELKNVC YKYEGTSKNV LSNINLSFEQ GNLYAIMGKS GSGKTTLLSI ISGLDLATSG 
EVLWNGKSLK EINRDDYRAK GIGVIFQGYN LLTNATVLEN IILSMNISES KEKNKKQFAL 
DILSRVSIDE EKANRKTLKL SGGEQQRVGI ARALSHDPDI IIADEPTGNL DTDTEESIME 
ILKDLAHNQN KCVIVVTHSK NVATYADEVL GLSHGNLVND K