| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1768 |
|---|
| Symbol | |
|---|
| ID | 5741442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 2173688 |
|---|
| End bp | 2175943 |
|---|
| Gene Length | 2256 bp |
|---|
| Protein Length | 751 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641292868 |
|---|
| Product | PTS system, glucose subfamily, IIA subunit |
|---|
| Protein accession | YP_001558879 |
|---|
| Protein GI | 160879911 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components
[COG2190] Phosphotransferase system IIA components |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR00830] PTS system, glucose subfamily, IIA component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACA AAGCATTTGG TGTATTACAA AGAGTCGGGC GTTCCTTTAT GCTACCGATT
GCAGTTTTGC CAGTTGCCGG GCTTTTGCTT GGTTTAGGTA GTTCCTTTAC AAATGAAACT
ACGCTAGCAA CCTATAATCT ATTAGGAATA ATGGGACCTG GGACGGCTAT ATACAATATT
TTAACCATTA TGAGCAAATG TGGTAGCGTT ATATTTGACA ACTTACCACT GATATTTGCA
GTTGGTGTAG CTATAGGTAT GGCTAAGAAA GAGAAAGAGG TTGCTGCGTT ATCTGCAATG
ATTGCATTTT TTGTTATGCA TTCCGCAATC AGCGGTATGG TTTCTATTTA CGGTGGACCA
GAAGCCTTTA TTAGCGGAGC TACTGGTACT GTTTTGGGGA TGACATCATT ACAGATGGGA
GCTTTCGGAG GTATTATCGT AGGTCTTGGT GTTGCAGCAC TGCATAATCG ATTCTATAAG
ATTGAATTGC CAGCAGCATT TGCATTTTTC CAGGGGACTA GATTCATACC AATTATAAGT
ACTGTTGTTT TTACTTTTGT AGGAATTCTA ATGTTTTATA TATGGCAGCC AATACAGATA
GGTATCAATG GATTAGGAGG AGTGGTACAA AGTACAGGTA TCATCGGAAC TTTCATCTTT
GGTTTGATTA AGAGATTACT AATACCATTC GGTCTTCATC ATGTATTTTA TTTACCGTTC
TGGCAGACAG CAATCGGTGG AACAATGGAG ATTGCCGGAA AAACTATTAT AGGCGCTCAG
AATATATTCT TCGCTCAACT GGCTGATCCA TCAACAGTAC ATTTTTCTAC TTTAGCAACC
AGATTTTTCA GTGGTGAATT TATTATATAT ATTTTCGGAT TCCCAGGAGC AGCATTGGCT
ATGTACCGCT GTGCTCGTCA AGAGAAGAAA AAAGAAGTTT ATGGATTATT ATTATCAGCA
GCACTTACTT CCATTATGAC AGGTATTACA GAGCCAATCG AATTTTCCTT CCTTTTCGTA
GCTCCTGTTT TGTTTGGAAT TAGTGCCGTT ATGGCAGGTC TTGCATACGC CATTGCACAA
GCATTAAATA TAGCAGTCGG CTTGACATTT TCAGGCGGTT TTATCGATTT GTTTTTGTTT
GGTATTTTGC AAGGTAACAG GAAGACCTCA TGGCTTCTTA TCATACCTGT AGGAATTGTT
TATTTCTTAG TATATTATTA CATCTTTAGT TTCTTTATCA AGAAAATGAA TTTGAAGACT
CCAGGTAGAG AAGCAGACAA TGAGGAAAGT AAGTTATATA CACGTGCCGA CTATGAAAAA
AAGAAAAATG TATCGAAAGA TGAAAAAGGT TCTGATGTGG ATGAACTCTC TGCAGCAATA
ACAGAAGGAC TTGGTGGAAA AGCAAATATC AGTGATGTGG ATTGTTGTGC AACCAGATTA
AGAGTAACCG TATTTGATGG TAATAAAGTA GAAGATAACA TTTTAAAATC TACGGGAGCA
TCAGGAGTTA TCCATAAAGG AACCGGTGTT CAGGTTATTT ACGGACCGAG AGTAACCGTT
ATTAAATCTA ATTTGGATGA TTATCTGGCG ACAACTAGTG ATGTAGCAGA GAAAAAAGAT
TTTGCAAAAG CAGCGAATAC AGAAAATAAA AATTATGAGA ATAATGTAAG TAAAGTAAAT
AGTGCAGATA AACAAAATAG TGCAGATAAA CAAAGTAGTG AAGACAAACA AGATACTGTA
GACAAACAAA GTACTGTAGA CAAACAAAGT AGTGCAAATA AACAAAGTAA TGCAGACAAA
CAGGGAAAGG AAACTATTAT TTTCGCTCCA TTAAGTGGCA AGGTAATAGA ATTAACAGAT
GTAAATGACG GCGTTTTTTC TGAAGGTATG TTAGGAAAAG GGTTTGCAAT CGAGCCATCG
GAAGGAAAAG TTGTAGCACC ATGTGATTGT AAGGTGGAAA CAGTTTTTGA TACAAAACAT
GCCATAGGGT TAAGCTGTGG TAATGTAGAA TTACTGATTC ATATTGGAAT TGATACTGTT
GAGTTAAATG GAAAAGGTTA TGATATCAAA ATTCATGATG GAGATGTTTT AAAGAAAGGC
GATGTTATCG GCTACTTTGA CATAAACTTA ATTACTGAAG CAGGATATCG CGTGGTAACC
CCGGTTATCG TTACCAATAC GGATGACTTT GAATCAATAG AGATTTTGAA AAAGGATTCT
ATTAAGGCAG AAGAAAGAGT TATGAGTGTA AAATAA
|
|---|
| Protein sequence | MKDKAFGVLQ RVGRSFMLPI AVLPVAGLLL GLGSSFTNET TLATYNLLGI MGPGTAIYNI
LTIMSKCGSV IFDNLPLIFA VGVAIGMAKK EKEVAALSAM IAFFVMHSAI SGMVSIYGGP
EAFISGATGT VLGMTSLQMG AFGGIIVGLG VAALHNRFYK IELPAAFAFF QGTRFIPIIS
TVVFTFVGIL MFYIWQPIQI GINGLGGVVQ STGIIGTFIF GLIKRLLIPF GLHHVFYLPF
WQTAIGGTME IAGKTIIGAQ NIFFAQLADP STVHFSTLAT RFFSGEFIIY IFGFPGAALA
MYRCARQEKK KEVYGLLLSA ALTSIMTGIT EPIEFSFLFV APVLFGISAV MAGLAYAIAQ
ALNIAVGLTF SGGFIDLFLF GILQGNRKTS WLLIIPVGIV YFLVYYYIFS FFIKKMNLKT
PGREADNEES KLYTRADYEK KKNVSKDEKG SDVDELSAAI TEGLGGKANI SDVDCCATRL
RVTVFDGNKV EDNILKSTGA SGVIHKGTGV QVIYGPRVTV IKSNLDDYLA TTSDVAEKKD
FAKAANTENK NYENNVSKVN SADKQNSADK QSSEDKQDTV DKQSTVDKQS SANKQSNADK
QGKETIIFAP LSGKVIELTD VNDGVFSEGM LGKGFAIEPS EGKVVAPCDC KVETVFDTKH
AIGLSCGNVE LLIHIGIDTV ELNGKGYDIK IHDGDVLKKG DVIGYFDINL ITEAGYRVVT
PVIVTNTDDF ESIEILKKDS IKAEERVMSV K
|
|---|
| |