| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1729 |
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| Symbol | |
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| ID | 5741480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 2128734 |
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| End bp | 2131175 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641292829 |
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| Product | DNA ligase D |
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| Protein accession | YP_001558840 |
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| Protein GI | 160879872 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0256122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTACAA AACTAAATGA GTACAACCAA AAAAGGAACT TTGAAAGAAC CTTAGAGCCG
GAAGGAAAAA CAGAAGATTC TGAAGAAAGT CTAAGATTTG TCATCCAGCA CCATATGGCC
CGTAAAGAGC ACTATGATTT TCGACTGGAA TGGAATGAAG TTCTTTTGAG TTGGGCAGTA
CCTAAGGGAC CATCTTTTGA TACACATGAT AAGAGGCTCG CCGTACAGGT GGAAGACCAT
CCTCTGGAAT ATAGGAACTT TGAGGGAACT ATTCCAAAAG GGGAGTACGG CGGTGGAGTA
GTCATGCTCT GGGATGAAGG CTTTTGGGAA CCTCAAGGAA ATGTCGAGGA AGGACTCCGT
GAAGGCATGC TGAAATTTGT TCTGAAAGGA AAGCGGCTTA AGGGAAAGTG GGCCTTGGTC
CGGCTGAAAG CAAAGGCCAG TGAAGCAAAG GATAACTGGC TTTTACTGAA AGAAAAAGAT
GAGTATGTTA AAAATACGGA TGGGATATCC GAATTTATCA CCAGTATCAG AACTGGACGC
ACCATGAAGG AAATCGAAGA AGGGGAAGAA GAAAAAATCA TGAGAAACCC CTTCCATATG
GTGGATGCTC AGCTCGCCAA ATTAGTTAAT ACGGTCCCTG AGGGTGAGGA CTGGCTCTAT
GAGTTGAAAT ATGATGGCTA TCGAATTATT GCGTTTGTGG AAGGAAACAG TGTACGTCTA
ATCACCAGAA ATGGTAATGA CTATATGAGG CGGTTTCATG ATGTTGCCAC TTCGCTTATT
GACCTTGCTG CTGGAAGGGC GATGGTACTG GATGGAGAAA TGGTAGTTAC AGACCCATCG
GGCAAAACAG ATTTCCAGGC TCTGCAAAAC TATATGAAGA ATCCCAAGGG CCAAAATCTA
ACGTATATTG TTTTTGATCT TCTTGCACTT AATGGTGCGG ATCTTCGAGG ACAACCTTTG
ATTCATAGAA AAGAAATGCT TGAAGCTTTG ATGAAGGATG CCCCTAAAAA CCTCTACTAT
AGTCGATATG TTAGAGGGAA CGGAAAGGAA AGCTTTGCGG TAGCCTGTGC GTCAGATATG
GAAGGAATCG TAGGTAAAAA AGCCGATTCC ATCTACAGCG GAACCAGGAA TGGTGACTGG
ATTAAACTCA AATGTGATAA AAGACAGGAA TTTGTCATTG GAGGATATAC ACTTTCCGAC
AAAAAGGTAT GGGGAATAAG TTCTCTTCTC CTTGGCGTCT ATGAAGGTGA GGAATTGGTC
TTTGCCGGAC GTGCCGGTAC TGGGCTAAGT GAGTCTGATA TGAAAACTCT TGAGGAAAAA
TTTGAGAACA TAAAGAGGAT GGCCCCGGTT TTTAAAACTG CACCTAGTCC TAAGTCTAAT
GAAAAGATTA CATGGCTTGA GCCAAAGCTG GTTGCGGAAA TCAAATTTGC TGAATGGACG
AAAGACAATC TATTAAGACA GGCAAGCTTT AAAGGTATAC GAACAGATAA GGATCCTATG
GATATAAAAA GGGAAAAGCC GGAGGAGGAA ATACAGTCCC AATCCTCTGA AAAAGAAGTG
GAGAAACCAA TGGGAGTAAA TGCAAACAGT ATTATTATCG AAGGAATTAA AATTTCCAAT
CCGGATAAAG TGATGTTTGA TGACCCTGTA ATCACAAAGT TAGATGTGGT TCAGTATTAT
GAAAAGGTTT CGGAGCTTAT GCTGCCGTAT GTGAGTCACA GGGTTCTCAG CATTGTACGC
TGTCCCAAAG GAGTTTCACA GACATGCTTT TATAAGAAGC ATCCCGGTGC GGGAAGCAAA
GGGATTATTA CAATTCCCAT TACTACCAGC AGTGGGGAGA CAGAAGATTA CTTCTATATT
GAGAATATTT CAGGGCTTAT CTCTGAAGTG CAGATGGGTA CACTAGAATT TCATACCTGG
GGAAGCCGTA TCGATGAGCT TGAAAAGCCT GATGTGATGG TATTTGATTT GGATCCGGAT
GAAGGAATGG ATCTAAGCCA GGTCCGCCAG GGAGTACTGG ATGTTAGAAG TATTCTTAAC
GAACTTTGTT TGAACTCGTA TCTCAAGACC AGTGGCGGCA AAGGATATCA TGTAGTAGTC
CCTTTAAAAC CGGTTGTTAA TTGGAATGTG TTTAACGATT TTGCAAGGCG GGTTGCCGAA
GTTATGGAGA AGAAGTGGCC TGACAGATAC ACAAGTAATG TCAGAAAGGC TAAGCGTACA
GATAAGATAT TTATTGATTG GATTCGAAAT GGTAGAGGCG CTACAAGTGT CGCTCCCTAT
TCCGTAAGGG CGAGGAAAGG TGCAAGGGTT TCCATGCCTA TTGCATGGGA GGAACTTGAC
ACAGTTGCTC CCGACGGCAT CACTATGGCG GATGCACTTT TGAGGTTAAA CGGCAAAGAC
CCTTGGAAAG ATTTTTTCCA GAATAATCAG ATGCTTAAAT AA
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| Protein sequence | MTTKLNEYNQ KRNFERTLEP EGKTEDSEES LRFVIQHHMA RKEHYDFRLE WNEVLLSWAV
PKGPSFDTHD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV VMLWDEGFWE PQGNVEEGLR
EGMLKFVLKG KRLKGKWALV RLKAKASEAK DNWLLLKEKD EYVKNTDGIS EFITSIRTGR
TMKEIEEGEE EKIMRNPFHM VDAQLAKLVN TVPEGEDWLY ELKYDGYRII AFVEGNSVRL
ITRNGNDYMR RFHDVATSLI DLAAGRAMVL DGEMVVTDPS GKTDFQALQN YMKNPKGQNL
TYIVFDLLAL NGADLRGQPL IHRKEMLEAL MKDAPKNLYY SRYVRGNGKE SFAVACASDM
EGIVGKKADS IYSGTRNGDW IKLKCDKRQE FVIGGYTLSD KKVWGISSLL LGVYEGEELV
FAGRAGTGLS ESDMKTLEEK FENIKRMAPV FKTAPSPKSN EKITWLEPKL VAEIKFAEWT
KDNLLRQASF KGIRTDKDPM DIKREKPEEE IQSQSSEKEV EKPMGVNANS IIIEGIKISN
PDKVMFDDPV ITKLDVVQYY EKVSELMLPY VSHRVLSIVR CPKGVSQTCF YKKHPGAGSK
GIITIPITTS SGETEDYFYI ENISGLISEV QMGTLEFHTW GSRIDELEKP DVMVFDLDPD
EGMDLSQVRQ GVLDVRSILN ELCLNSYLKT SGGKGYHVVV PLKPVVNWNV FNDFARRVAE
VMEKKWPDRY TSNVRKAKRT DKIFIDWIRN GRGATSVAPY SVRARKGARV SMPIAWEELD
TVAPDGITMA DALLRLNGKD PWKDFFQNNQ MLK
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