| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1724 |
|---|
| Symbol | |
|---|
| ID | 5741475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 2123969 |
|---|
| End bp | 2125384 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641292824 |
|---|
| Product | multi anti extrusion protein MatE |
|---|
| Protein accession | YP_001558835 |
|---|
| Protein GI | 160879867 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTTA ATATGAGACA TAAAATGAAG TTATTGAAGT CCGGCTCAAA AGTAGATCTT
TTTTTGGAAC GACAACTTGG CAGTAAGCTG TTTACATATA AAAAGATTTT TACTATGTTA
ATTCCACTGA TATTGGATTC ATTCTTCATA AATGTAATCA TTTTACTGAC AACTGCTATG
ATTAGTTCTT CCAGTCAAGA ATCTGTTTCA GCAGTTAGTA TGATAAACCC ATTGTCTCTG
ATAATGTGGT CTATTTTTAG TGCAATTTCC GTGGGCGGTA CAGTAATTGT TGCACAGTAT
AAGGGGAGTG GTAATGAAGC AAAAATCCGA GAAGCTGCAG GGCAGGTCAT GCTGGCAACA
TTTTTGGTGG CGATTGCTTC TTGCATAATA CTGGTAGCAT TTTCAGACGT ACTGGTGCGG
CGGATGTTTG GTGCGGCTGA TCCAATTGTT ATCAATAAAG CACGTGGTTA TCTTATTGGT
GTAGCCATAT CACAGATATT TCTTTCTGTT TATATGGGGG CATTTGCGAT ATTTCGTGGC
ATGGGTGCGA CAAAGATATG TTTGTGGTTA ACGATTATTA TTAATGTGAT ACATTTGTTA
GCAAGCATGT TGTTTTTGAA TGTTATGCAT CTTGATATCT TTGGAACAAC GCTTTCGCTT
AATATAGCAC GACTCATTGG TAGTGTGGTA GCAGTCTGGT TATTAATGTA TCCCAAGAGT
ATATTACGAA TCTATCCTCG TAATATTTTT AGAATCAACA GACCGATTTT AAATTCGGTG
TTCAAACTTG GAATTCCATT TGCACTTGAG CAAGTATTTT TTAACGCTGG GAGCATGATA
GTACAAACCT ACATCGTGAG CCTAGGTACA ATATACATAG CAGCAAATGC CATTGCAAAT
TCAGCATTTT CTATTCTATA TTCTGCAGGA CTTGGTGTGG GTACATTAGC GACTACCATT
GTGGGACAAT GCATAGGTGC TGATGACGAT TCATTAGCAC GACATTACGG TATGATAATG
GTTAGGCTTG GAACTGTAAT CTCAATAGTT TCAATCATTG TACTATTTCC GTTGATGCCG
ATAATATTAA ATTTGTATCA GGCACCGGAA GAAACGCTTT CTATAATTAA TAAACTATTG
CTTATCGCTA TAATCCCTAT GCCGTTTTTT TGGTCATATT CCTATGTAAT GCCATGTGTA
CTTCGATCAA CTGGGGATGC AACGTTTAGT TCATTGGTTT CTCTGATTAC TATGTGGAGT
GTCCGTGTAG GTCTTGGTTA TATATTTACA ATCAAACTTG GCTTTGGTGT ACAAGGCGTT
TGGATCTGCA TGGGATTTGA ATGGGTGGTA CGGGCTCTGA TTTTTTATTT ACGATATCGA
TCGGGTGTAT GGTTGTTAAA AAAAGTGATA AAATGA
|
|---|
| Protein sequence | MQFNMRHKMK LLKSGSKVDL FLERQLGSKL FTYKKIFTML IPLILDSFFI NVIILLTTAM
ISSSSQESVS AVSMINPLSL IMWSIFSAIS VGGTVIVAQY KGSGNEAKIR EAAGQVMLAT
FLVAIASCII LVAFSDVLVR RMFGAADPIV INKARGYLIG VAISQIFLSV YMGAFAIFRG
MGATKICLWL TIIINVIHLL ASMLFLNVMH LDIFGTTLSL NIARLIGSVV AVWLLMYPKS
ILRIYPRNIF RINRPILNSV FKLGIPFALE QVFFNAGSMI VQTYIVSLGT IYIAANAIAN
SAFSILYSAG LGVGTLATTI VGQCIGADDD SLARHYGMIM VRLGTVISIV SIIVLFPLMP
IILNLYQAPE ETLSIINKLL LIAIIPMPFF WSYSYVMPCV LRSTGDATFS SLVSLITMWS
VRVGLGYIFT IKLGFGVQGV WICMGFEWVV RALIFYLRYR SGVWLLKKVI K
|
|---|
| |