| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1612 |
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| Symbol | |
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| ID | 5744434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 1985551 |
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| End bp | 1989780 |
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| Gene Length | 4230 bp |
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| Protein Length | 1409 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641292714 |
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| Product | Pectate lyase/Amb allergen |
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| Protein accession | YP_001558725 |
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| Protein GI | 160879757 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAGT TGAATTTGAA ACGATGGATA GCGATGTTCT TAACTGCATT AATGTTGCTA
ATAACAATTA TACCATCGCC GTTAAGTATG GTTGCTAAAG CATCTAGTAC TAACATTGAC
CTAATCGAAA GTAGTGGATG GTTAGAATCC GCATATGTGA AGTGGATGCC TATGGACGGG
GTAGACGGAT ATGTAGCGTA TGTTAAGGGT GCTTATGAAG AGGATACCGC TTATGTTAAG
TTAGATAATG AATTAATAAG AAAATATCCA ACTTACTATA GGGCGGATGC CGTAGGGCTT
GCAGCAGGTA TTTATGTCAT TAAAGTTGTC CCTGTTATAT CTGGGATAGA AGTTGAGGAG
AGTGCAGAGG TAACTGGTAC TTTATTTGTA TCAGCACATA CAAGAGAAGG TTTTGCATTT
TCAGAGTTTT CAACGTACAA AACAGGATCC GGTGGTTATA ATAACGATGG AACTGTTAGA
GATGGTGCAC AGATTGTTTA TCTAACCAAT GAAAATAAGG ATACTGTTAC CTTGGGCGTA
AACACAGGTA GCAAGGAGGA AACTTGTACC GGTATTGTTG ACATTTTGTC AAAGAGAGAA
AAGGGAAAAG ATTTAAGGCC ACTTATCATA CGTATCATTG GAAAAGTAGA AACTCCTGCT
GGAGTGAGTG GTTCTTTGTT AAATATAAAG AAAACTTCCA ACGTAACATT AGAAGGTATC
GGAGACGATG CAACAGTCTA TGGCTGGGGT ATTCTAGTTC GAGAAGGTAA AAACATTGAG
ATTAGAAACT TAGGAATCAT GTGGTTTGGT GATGATGCAG TTTCATTGGA CACTAAAAAT
GAGAATATAT GGGTTCATAA CAATGATTTA TTTTATGGAA AACCAGGGAG CGATTCTGAC
CAGGTTAAGG GAGACGGTTC CATAGATGTA AAAGCTTTTT CTACCAATGT AACGGTTTCT
TACAATCACT TTTGGGATTC AGGTAAGTCT AGTCTAGCAG GAATGAGTGA AAGTCAGGAA
TTTTTTATTA CTTATCATCA CAATTGGTTT GACCATTCAG ATTCACGTCA TCCACGAATC
AGACTTGGAA GTATACATAT CTATAATAAC TATTTTGATG GCGTTTCAAA ATACGGTGTT
GGAGTTACAA TGGGAGCTTC TGCATTTGTA GAAAATAATT ATTTTAGGAA TTGTCAATAT
CCAATGCTTT CTTCTGGACA AGGTACCGAT AAATACGATT CTAATACAGG TAACTATACC
AATAAGGGAA CTTTCTCTGG AGAAAATGGT GGTATAATTA AAGAATTTGG AAACTTCATG
GTCGGTGAGA AACGATTTGT AAATCAATAT ACAACACCAG ATGCGGGACA AATTGATGCC
TATACAGTGG AGAACAGAGA GGAGCAAATC CCAGCTGATG TAGTAACTGT ACAAGGGGGA
ACAAGTTACA ATAACTTTGA TACCAATCCA AGTAGAATAT ATTCTTATTC AGTAGATTCT
GCAGAAGTGG CAAAAATTAA GGTTGAATCT TTTGCAGGAC GTAACAACGG TGGAGATTTT
AAATGGTATT TGAGTGAAGC AGAAGATACG AATTCTGAAG TAATTCCTGA GCTACAAGTG
GCAATTATGA ATTATACGTC TAGGTTAGTT TCCGTTGGTG GATTAGGAGA CAATAATGAA
GGGCCAACTA CAGAACCCAC ACAATCACCA ACAGAACCAA CCATAGCACC AACACAACCG
CCAACGAGCG AAGATTATTC ACATAATTTC ACAACACAAA GACTTACAAG TTCTTTCTAT
TCGTTTCCAG GATTAGCTAA TTTGGCAAAT AATAAAGGAA CCGTTACATA CAATGGTATG
AATCTTACGG ATTGTTTAAA GATGGAAACG GGAACACAGA TAGTTTTTAC CTCACCGGCA
GATGGTATTT ATACCATGGT CTTTAATCCT TCAACTGGTA AGGTGAATGC AAAAGTGAAT
GGTGCAAAGT ATACAGGTGA TGATCAAACA GGTATTCTAA CAATTCCTGT TTTAGCTGGA
ACAAAATATA CAATAGATAA AGCAGATACC GCTAATTTAT TTTATATGAG TTTATCTTTG
GATGATAAAG AAGTACCAAC AGTAACACCA ACCATAGTAC CAACGGAAGC ACCTAAGCCA
ACAGAAATAC CAACAGTAAT ACCAACAATA ACACCAACTA TAGTGCCTAC AGGAACACCA
ACACCTCCTG AATCTGTTGT AGAGGGAGAC ATCTTTGTAT CACCAAACGC ATCAGAAACT
GGAGAAGGTA CATTTGATGA TCCAATTAAG CTTATCGTTG CTCTAACCAA AGTAAAAGCT
GGTAATACTA TCTGGATGTT GCCAGGAAAC TATAAGTACA GTGAACCGAT TGTTGTAGAA
AAATGGAACA GTGGTAGTGC TGGTGCTTAT AAGACAGTAA GAAACTATAT GGGTGGTAAG
GTTATTTTAG ATTTTTCGGA GCAGGAGTAT TTACCTAGCA ACCGTGGTCT AGTACAAGAT
GCAGATTACT GGAAATGGTA TGGAATCGAA TTTAAAGGCG CCGGAGATAA TGGTATGTTA
CTCTCTGGAA ATCATAACAT AATTGAAATG TGCCAGTTTT ATGAGAATAG AGATACTGGT
TTACAATTAA GTCGTTATGA TACTACAGCT GCAACCATAG ATCTATGGCC AAGTTATAAC
TTAATAAAGA ATAGCACATC CTTTAACAAC AGCGATGCAA CAGGAGAAAA TGCAGATGGC
TTTGCAGCAA AGTTAACTTG TGGTGAAGGT AACGTATTTG ATGGTTGCAT GTCTTATAAT
AACAGTGATG ATGGATGGGA TTTATATGCT AAGTCAGAAA CTGGTCCAAT AGGAGTAATC
ACTATTAGAA ATTGTATTGC TTTTAGAAAT GGTAAATTAA CGAACGGATC AGGTAGTGCA
AGCGGAGATA TGAACGGATT TAAACTTGGT GGTTCGGGAA TTGCTACACC ACACATAGTT
GAAAATTGTA TGGCATTTAA AAATGGTGCA CATGGTTTTA CAGATAACAA TAATCCTGCA
CCGCTCACAT TTAAAAACAT TACAGCATTT AATAACAGCA ATCTTAGTGG AAGTAAAAAG
GCTAATTTCC AGATTGATCG TGCAAACAGA CCAACTGTTT ACAATGCAAT CGGAATAAGC
ACGAGAAAAA TCGCTTCGGA TAAGATTACA TCAGCGATTG GATCAAAAAT CGTATATATG
AACAGTGATA AATATTACGA ATATGAAGGA AGTATAGGTG GAACCTTCGA TTCAACGAGT
AAAAGTGGAA CAGTGATTAC ACCAGTTGCT ACTGATATTT TTGTGAGTAT CGTTGCACCA
GATCTATCTA CTGATTTCCA TACTGCATGG AGAAACTCAG ATGGTTCCAT TAATACTCAT
GGTTTTCTGC AAATTAAGGA GAATAGTAAA TATGCAACAT TCTCAACGAA TGGCGGTTTT
ATTGGTGCAG TTTTTAAAGA TGAGGTTATT GTAGAGCCTA CCCCTGAACC AACGCCAACC
CCTGAAGTAA CACCAAAACC AACACCAGAG GTAAAGCCAA GTCCAACACC AGGGGGGAAA
CCAGATCCAG TACCAGACGT AAAACCAAGT CCAACACCTG AACCAACACC GAAAGTGGCG
TTAATTGATC AGATTAATGT AAATTCCGAA AAAAATATTT ATATTGGAGG AACAATGGAT
TGGGAATGGG TAGGCTTACG TTACCCAAGT ACACTAAAAG TTGTAAAGGA CTTTACAAGC
TCCAATACTA ATATTTCCGA AGGTGAAATG ATGCTTAGTT ATAAGTCTGG TAATACCAAG
ATTGCTATAG TAAGTCAAAC TGGAAAGATT GTTGGTAAGA GTAAAGGAAA AACCATAATT
TATATTACAG TTACTTTGTC AGACGGTAAA ACAAAGCAAT TACAACAACA AGTCACAGTA
AATGAAGCGA GCATTACGTT TAAGAGGGCA GCTTCATCCA TGGTGATAGG TGATAAAAAC
TCATTTACAT TGGAAGTCAA TGGCTATAGA AATGAAGAAA TTGTATGGAA AACTACAAAG
CGAGATATTG CTATCGTTGG CAAAAATAAT GGTAAATTAA CCGCTGTAGT ATCAGCAAAA
TCTGTAGGGG AAGATTATGT CGTTGTTAGT GTGAAAGATA AAAATGGCAA ATTACTTTCT
ATCAAAACCA AAGTGCAAGT TTATAAATAG
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| Protein sequence | MQKLNLKRWI AMFLTALMLL ITIIPSPLSM VAKASSTNID LIESSGWLES AYVKWMPMDG
VDGYVAYVKG AYEEDTAYVK LDNELIRKYP TYYRADAVGL AAGIYVIKVV PVISGIEVEE
SAEVTGTLFV SAHTREGFAF SEFSTYKTGS GGYNNDGTVR DGAQIVYLTN ENKDTVTLGV
NTGSKEETCT GIVDILSKRE KGKDLRPLII RIIGKVETPA GVSGSLLNIK KTSNVTLEGI
GDDATVYGWG ILVREGKNIE IRNLGIMWFG DDAVSLDTKN ENIWVHNNDL FYGKPGSDSD
QVKGDGSIDV KAFSTNVTVS YNHFWDSGKS SLAGMSESQE FFITYHHNWF DHSDSRHPRI
RLGSIHIYNN YFDGVSKYGV GVTMGASAFV ENNYFRNCQY PMLSSGQGTD KYDSNTGNYT
NKGTFSGENG GIIKEFGNFM VGEKRFVNQY TTPDAGQIDA YTVENREEQI PADVVTVQGG
TSYNNFDTNP SRIYSYSVDS AEVAKIKVES FAGRNNGGDF KWYLSEAEDT NSEVIPELQV
AIMNYTSRLV SVGGLGDNNE GPTTEPTQSP TEPTIAPTQP PTSEDYSHNF TTQRLTSSFY
SFPGLANLAN NKGTVTYNGM NLTDCLKMET GTQIVFTSPA DGIYTMVFNP STGKVNAKVN
GAKYTGDDQT GILTIPVLAG TKYTIDKADT ANLFYMSLSL DDKEVPTVTP TIVPTEAPKP
TEIPTVIPTI TPTIVPTGTP TPPESVVEGD IFVSPNASET GEGTFDDPIK LIVALTKVKA
GNTIWMLPGN YKYSEPIVVE KWNSGSAGAY KTVRNYMGGK VILDFSEQEY LPSNRGLVQD
ADYWKWYGIE FKGAGDNGML LSGNHNIIEM CQFYENRDTG LQLSRYDTTA ATIDLWPSYN
LIKNSTSFNN SDATGENADG FAAKLTCGEG NVFDGCMSYN NSDDGWDLYA KSETGPIGVI
TIRNCIAFRN GKLTNGSGSA SGDMNGFKLG GSGIATPHIV ENCMAFKNGA HGFTDNNNPA
PLTFKNITAF NNSNLSGSKK ANFQIDRANR PTVYNAIGIS TRKIASDKIT SAIGSKIVYM
NSDKYYEYEG SIGGTFDSTS KSGTVITPVA TDIFVSIVAP DLSTDFHTAW RNSDGSINTH
GFLQIKENSK YATFSTNGGF IGAVFKDEVI VEPTPEPTPT PEVTPKPTPE VKPSPTPGGK
PDPVPDVKPS PTPEPTPKVA LIDQINVNSE KNIYIGGTMD WEWVGLRYPS TLKVVKDFTS
SNTNISEGEM MLSYKSGNTK IAIVSQTGKI VGKSKGKTII YITVTLSDGK TKQLQQQVTV
NEASITFKRA ASSMVIGDKN SFTLEVNGYR NEEIVWKTTK RDIAIVGKNN GKLTAVVSAK
SVGEDYVVVS VKDKNGKLLS IKTKVQVYK
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