| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1593 |
|---|
| Symbol | |
|---|
| ID | 5744415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 1963131 |
|---|
| End bp | 1964513 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641292695 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001558706 |
|---|
| Protein GI | 160879738 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000199125 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CAAATGATTT GGGGAAAGAT AATATTTCCT CATTGGTTTT TAGGCTTGCA
ATCCCTACGA TGATTGCCCA GTTAGTTAAT GTGCTCTATA GTATTGTTGA CCGAATGTAT
ATTGGAAATA TCCCTGAAAT CGGCGACATA GCATTAGCAG GTGTTGGGGT ATGTGGTCCA
ATCGTAACCT TACTCTCCTC CTTTGGTACT TTGGTTGGAT TAGGTGGGTC CATTTTGATG
GCTATGAAAA TGGGAGAACA AAAAAAGAAG GAAGCTGAGC AAATATTAGC GAATAGTTTC
TTAATGTTAC TTATTCTCTC TGGAACTTTA ACTCTGATTT TTTTACTTTC TAAAGATTTC
CTTCTCTATC AATTCGGAGC AAGTGATGTA ACATTCCCTT ATGCTAATAC TTATATGACA
ATCTATACCG CTGGAACCTT TTTTGCTTTA CTAAGTATTG GCCTGAATTA TTTTATCACA
TGTCAGGGTT ACTCGATGGT TAGTATGACA ACCGTTATAA TCGGCGCTAT TAGCAATATT
ATACTGGATT CCGTCTTCGT CTTCGGATTT CATATGGGGG TTGCTGGGGC TGCGATTGCT
ACTGTCATTG CGCAGATGTT TTCTTGTCTA TTTGCATTAA TTTTTCTATT CCGTAAGCAA
GTACCTATAC GCATAACCTT TGGTGGATAC TCCAAAGCAA TCATGAAGAA GATAATTTCC
ATTGGTTTAT CACCATTTCT TATATTAGCA TCGGATAGTA TTATTATCAT TATTATGAAT
GCTGTATTAC AGTATTCCGG TGGTCCTAGC GAAGGTGATT TATTAATATC AGCCGCTACT
ATTGTACAAA GTTATATGTT ATTAATCACA GGCCCTTTGG TTGGAATAAC TGGTGGAACA
CAAGCTATTA TCTCTTATAA TTACGGAGCT GCACGTGCTG ATCGTATCAA ACAAGCAGAA
CGTATCATAT TGATGTTATG CCTTGCATTT ACTTCATTTA TGTTTCTAGT TTCCCGTAGT
GTTCCGCAGT ACTTTGTAAG AATCTTTACC ACGGATACTT CCTTAACTCA TCTATCTGTT
TGGGGTATTA AAGCATTTAC ACTTGGTGTC ATCCCTCTTT CTTTTCAATA TGCACTGATC
GATGGTCTAA CAGCTTTGGG ACGTACAAAA ACTGCTCTAG CCTTATCCTT ATTCCGTAAA
AGCTCGTATG TAGTATACAT GCTATTATTA ACCTCATTAT TTACAGCAAA AAGCGCATTC
TATGCAGAGC CGCTAAGTGA TACGATTTGT GCTATTGTAA CAACAACTGT ATTTCTTAAA
GTATTTAACA AACATTTGAA TGCTCGTTGT AAAAATGCGA ATATACAAGA GATTAATTCA
TAG
|
|---|
| Protein sequence | MKKTNDLGKD NISSLVFRLA IPTMIAQLVN VLYSIVDRMY IGNIPEIGDI ALAGVGVCGP
IVTLLSSFGT LVGLGGSILM AMKMGEQKKK EAEQILANSF LMLLILSGTL TLIFLLSKDF
LLYQFGASDV TFPYANTYMT IYTAGTFFAL LSIGLNYFIT CQGYSMVSMT TVIIGAISNI
ILDSVFVFGF HMGVAGAAIA TVIAQMFSCL FALIFLFRKQ VPIRITFGGY SKAIMKKIIS
IGLSPFLILA SDSIIIIIMN AVLQYSGGPS EGDLLISAAT IVQSYMLLIT GPLVGITGGT
QAIISYNYGA ARADRIKQAE RIILMLCLAF TSFMFLVSRS VPQYFVRIFT TDTSLTHLSV
WGIKAFTLGV IPLSFQYALI DGLTALGRTK TALALSLFRK SSYVVYMLLL TSLFTAKSAF
YAEPLSDTIC AIVTTTVFLK VFNKHLNARC KNANIQEINS
|
|---|
| |