| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1513 |
|---|
| Symbol | |
|---|
| ID | 5744335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 1861516 |
|---|
| End bp | 1862085 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 641292615 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001558626 |
|---|
| Protein GI | 160879658 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000721449 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGAGAAT TAAAAAGCAT TGAAGAAAAA ATATTAGATA GGACATTATA TTTGATCGGG
AAGGATGGCT CCTGCAATAT ATCGATAAGA GCTATCGCTA AGGAAGCAGA TGTTAATGTA
AGTGCAATAA ACTACTATTT CCGCACGAAG GAGGAAATGT TAAAGCAAGC GAAGGAGCTA
TACATTGTAA ACACTCAATC CATTACCGAT ATTCTTAAGG AAGAATATGA AGACGAAGAA
AAACTAATAG TTGCATGCAA TGAAATTTTG GAATATATAA TACGATATCC AGGCATTACT
GTCCTATTAA AAGATGCCAA AGAAAAAGAG GATGAAATAT CAAAAAAGAT TCTAAAGGCA
TCTGATGAGA TGTCGACAGG TATCAATGAT CTCTTAGCTA AAGTGTTAAA GGAAGATCTT
AATCAATACA AATTAATGGT ATTTTGGTCA GCCATTAATT ATCCAATCGA AAATCAAGGA
ATAAATCAAT TTAATACCAC TATTATAGAA GATAGAGAAG ATAGAGTATC CTATATTAAG
TACTTACTCT CAATTTTAAA AGGAAAATAA
|
|---|
| Protein sequence | MRELKSIEEK ILDRTLYLIG KDGSCNISIR AIAKEADVNV SAINYYFRTK EEMLKQAKEL
YIVNTQSITD ILKEEYEDEE KLIVACNEIL EYIIRYPGIT VLLKDAKEKE DEISKKILKA
SDEMSTGIND LLAKVLKEDL NQYKLMVFWS AINYPIENQG INQFNTTIIE DREDRVSYIK
YLLSILKGK
|
|---|
| |