| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1234 |
|---|
| Symbol | |
|---|
| ID | 5744839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 1557321 |
|---|
| End bp | 1558700 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641292339 |
|---|
| Product | FAD linked oxidase domain-containing protein |
|---|
| Protein accession | YP_001558351 |
|---|
| Protein GI | 160879383 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGG TTAATGTTAA AATATTAAAT AGTATAATCA ATGATGGTGA TAGGATTCTT
ATTGATAAAA TAGATGATAG TTACCTTAGT GATGCGCTGG GACGTATCAA AGGACATGCA
GATGTGGTTT TGTTTCCCGT AAATGTAGAT GAAGTTTCAA AGATTATGAG ATATGCTTGG
GAAAACCAGA TTCCTGTTAC ACCAAGGGGC GCAGGAACAA ATTTAGTTGG ATCTACTGTA
CCCGTAGAGG GAGGAATTGT ACTTGATTTA ACAAGAATGA ATCAGATCAT TGAATTTGAT
GAAGAAACTA TGACTGCCAC AGTAGAGGCT GGGGTAGTAT TAGCCGATTT TCAAGAGTAT
GTGGAGGCAA AAGGGTGTTT TTATCCACCG GATCCAGGAG AAAAAACTGC AACAATAGGT
GGAAATATCA GCACGAATGC GGGAGGAATG CGTGCTGTTA AATATGGCGT TACCAGGGAT
TATGTCAGAG GCTTAGAAGT AGTACTTGCC AATGGAGAAA TTCTATGGGT CGGGAGTAAG
AATGTAAAAG ATGCGAGTGG TTTGTCACTT AAAAACCTGA TTGTAGGTTC GGAGGGTACC
TTAGCAATCA TAACAAAGTG CATTCTTAAG ATAATCCCCA AACCGGAAGT CACATTAAGT
GTACTTCTTC CCTATCGTGA TGTTAAGACT GCGATTCCTG GCGTTCTAAC TATTATCAAA
GAAAACGCAA ATCCTACAGC AATTGAATTT ATTGAAAGAG ATGTTATAAA ATTGGGGGAG
GATTATACTG GCCTGTCATT CCCGTATCCG AAAGCCGGAG CATACATTTT GATGACCTTT
GACGGCCGCA GTCTTGAGTT AGAAGGAAAC GTAGAGCGAG TAAAAAAATC GGCAATAAAA
CAAGGTGCAC TTGATGTTTT GATTCTTGAT AGTGAAGAAT TATTGATGAA TGTATGGAAG
ATAAGAGGTT GTTTTGTTAA GGCGGTAGAA GCAGTATCAG AGCAGGAACC AGTTGATTTA
GTGGTACCAG TAAATAAAAT CGTTGAATTT ATATCTTATG TAAGTGAATA TGAGAAAAAA
TCAGGGATGA GGATGATTCG ATTTGGCCAT GCTGGGGATG GAAACATCCA TCTTTGTATG
GTAAGAGGTA ACCGAAGCGA TGACAAATGG GAAAAAGAAT TGCAGGAACA TCTGAATGCT
ATATATCAGA AAGCATTTTT ACTCGGAGGA CTGACCTCTG GAGAGCATGG TATTGGATTA
AGCAAAAGGA TTTTTTACCT GAAGGAGACT GCACCACAGA ATTTAGAATT GATGCGGCAG
ATGAAAAGAG CCTTTGATGA GAGGGAGATA TTAAATCGAC ATAAGACATA TTTAGCATAG
|
|---|
| Protein sequence | MAEVNVKILN SIINDGDRIL IDKIDDSYLS DALGRIKGHA DVVLFPVNVD EVSKIMRYAW
ENQIPVTPRG AGTNLVGSTV PVEGGIVLDL TRMNQIIEFD EETMTATVEA GVVLADFQEY
VEAKGCFYPP DPGEKTATIG GNISTNAGGM RAVKYGVTRD YVRGLEVVLA NGEILWVGSK
NVKDASGLSL KNLIVGSEGT LAIITKCILK IIPKPEVTLS VLLPYRDVKT AIPGVLTIIK
ENANPTAIEF IERDVIKLGE DYTGLSFPYP KAGAYILMTF DGRSLELEGN VERVKKSAIK
QGALDVLILD SEELLMNVWK IRGCFVKAVE AVSEQEPVDL VVPVNKIVEF ISYVSEYEKK
SGMRMIRFGH AGDGNIHLCM VRGNRSDDKW EKELQEHLNA IYQKAFLLGG LTSGEHGIGL
SKRIFYLKET APQNLELMRQ MKRAFDEREI LNRHKTYLA
|
|---|
| |