Gene Cphy_1197 details

Gene Information

• Locus tag: Cphy_1197
• ID: 5743296
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 1512878
• End bp: 1514881
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 641292302
• Product: peptidoglycan binding domain-containing protein
• Protein accession: YP_001558314
• Protein GI: 160879346
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1686] D-alanyl-D-alanine carboxypeptidase

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAGA AATGTACCAG AGAGGTTATT ACTAAGAGAG AAAATAAGCA ATACACCAGC 
ATAAAATTCA TCAAAGGGCT AAGTTTCTTA TTAGTTGTAG CGATTCTTGG GAGCAATATA 
GCTCCAAGTA TAGTAATAGC TAAGACTACG GAAGACACTA CATTTGAATT TCAAGAAGAG 
AGCATGCCAG ACGATATCAA TACGCAAGGC GATCTTAATA TAGATGCTGA TACGTTAAAA 
AAGTTCGGTG AGAAAATAGA CTATTTAAAA ATGTCAAAGA AAGCAACAAT CTCAACAGAG 
AATAAGGCAA TGTTAGTTGA TATGACGGCG AGTGAATTAT TAGGAGGGTC CTTTTTATCC 
AGTCGTTCCA ATTTTAGTGG GTTTAATGAC TTGATGTTTA TCTTGACTAC ATTAAGGGAA 
GCTCCTCTAA CAGATATTGT AACGGTAAGT AAGCGAGCTG CTTCATTAAA GGGAGAAAAT 
ATATTCGGAT TCAAAGAAGG AGATAAGATT TCTCTCAATG ATTTACTTCT ATGTTTTTAT 
TTCACGGGAA GTGAAGATGC TAGGTTAGCT ATCGTTGATC ATATTGCTGG TAATGATACC 
ACATTTATTG CTATGATGAA TTCTGTTGCT CGAAATATCG GATTAATTAA CACGAATTAC 
TCTAACATAA ATGGCGATTA TAATAAAAGT CAGAGAACAA TGTTATATGA TATCTATTCC 
ATTGTTTACG AATTATTCAA TGAAGATTTT ATGAAAGAGG TTTTAACAGA AAATAAGCTT 
TTTATTACAT ATGAAAATAG TAATGGTAAT ACAGTAAAAA AAGCTTGCGT TAATCAGAGT 
ATGATAGATG CTAATAGTGT TGCAGTACCT GAGAACATGA AAATAGTTAT AGCATTTACA 
AGAAACTGCA AAATACTAGG TAATGGGCAA ATCGTATTAG TGGAAGGAGA AGATGGCCAT 
TTTTATCTCT CTATCTTAAT GGAGGTAGAT AAGAGAAGGG ATATCGGAAA GGAATCGGGT 
AGAATATTAG AGATAGTTAA TGGTAAAGAG TATTTTGATG AAAAAATACC AACGCCTACG 
CCGACACCAA CGAAGAAACC GGAACCAACA CCAAAGCCAA CAGTTACCCC GAAGCCAACA 
CCAAAACCAA CAGCGATTCC GACTCCTACA CCAATTGCAT ATAAAGCTAA AATTCCTACC 
CAAAGCAACA ATGCACGTTA TCAGTTCCTT ATGAATACAA ATTATAAAGC GTATACTATT 
TATGATGCGC CTGTAGGATT TCGGTCTGCA ACGGAAGCAG CCAAGAACAT GAAGGTAATA 
ACGGTTCCGG TCTGGAAGAT GGATGTGGCA GGAAAGAAGT ATCCCTCAAC AATGAAACTA 
TCAATCCATA AGAAACTTGC GGATGGAGTT TCTAGCATCT TTAAAGAAAT TTATGATTTA 
CCAATGAAAT TTCCGGTTAA GACAATGCTG GGATTTAGTT ATCGTAAGGT TGGAGGGGTA 
GGACTTAGTC AATCTACTTT ACTATCCATC CATTCGTTTG GCGCTGCAAT TGATATAAAT 
CCAGGAGATT ATGACAATGA CTATTTCCTT GGAAAAGGAA ATGACTTAAG AAACAGATCA 
AATCCATATT GCATTCCAGA CGAAGTGATT GAGATATTTG CAAGCTACGG TTGGTTCTGG 
GGTGGTGATT TTGAAATTAG TGCAGATACC ATGCATTTTC AATATCTAGG ATTAGAATTC 
TTGTCGTATC AGGGAAAGAA CCCATTTCGA GAATTAAAAT ATAAAGATGG AACTGTTATG 
AGTGGTATTG ATGTTAAGAA CTTACAGCAA CGTTTAAATC GTCTTGGATA TAAGGTGACT 
GTCGACGGCA CCTATGGAAA GAATACAGAA ACAGTTATAA AGAAGTTTCA AAAGGATAAT 
AAATTAAAAG AAACAGGAGT AGTAAATTAT TCTACTTGGG AAAAATTAAT CAATTTAACA 
CATTATATGG GATATGTATT TTAA 

 

Protein sequence

MSKKCTREVI TKRENKQYTS IKFIKGLSFL LVVAILGSNI APSIVIAKTT EDTTFEFQEE 
SMPDDINTQG DLNIDADTLK KFGEKIDYLK MSKKATISTE NKAMLVDMTA SELLGGSFLS 
SRSNFSGFND LMFILTTLRE APLTDIVTVS KRAASLKGEN IFGFKEGDKI SLNDLLLCFY 
FTGSEDARLA IVDHIAGNDT TFIAMMNSVA RNIGLINTNY SNINGDYNKS QRTMLYDIYS 
IVYELFNEDF MKEVLTENKL FITYENSNGN TVKKACVNQS MIDANSVAVP ENMKIVIAFT 
RNCKILGNGQ IVLVEGEDGH FYLSILMEVD KRRDIGKESG RILEIVNGKE YFDEKIPTPT 
PTPTKKPEPT PKPTVTPKPT PKPTAIPTPT PIAYKAKIPT QSNNARYQFL MNTNYKAYTI 
YDAPVGFRSA TEAAKNMKVI TVPVWKMDVA GKKYPSTMKL SIHKKLADGV SSIFKEIYDL 
PMKFPVKTML GFSYRKVGGV GLSQSTLLSI HSFGAAIDIN PGDYDNDYFL GKGNDLRNRS 
NPYCIPDEVI EIFASYGWFW GGDFEISADT MHFQYLGLEF LSYQGKNPFR ELKYKDGTVM 
SGIDVKNLQQ RLNRLGYKVT VDGTYGKNTE TVIKKFQKDN KLKETGVVNY STWEKLINLT 
HYMGYVF