Gene Cphy_1157 details

Gene Information

• Locus tag: Cphy_1157
• ID: 5742880
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 1463388
• End bp: 1470152
• Gene Length: 6765 bp
• Protein Length: 2254 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 641292262
• Product: nucleic acid binding OB-fold tRNA/helicase-type
• Protein accession: YP_001558274
• Protein GI: 160879306
• COG category: [R] General function prediction only
• COG ID: [COG3889] Predicted solute binding protein

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA ATGCAAAACG GTATTTGGCA GTGCTATTGA GTATCATAAT GGTATTCTCA 
ATAAGTCCTG TCAAAAGTTA TGCAAATGAG GCTGCTAGCA CTTTTGTGAG AATAAATAGT 
GCAGCAGAAC TTACTACAGA TAAGTATGTA ATGGTAGTAA ATACTGGATA TGCAGTGGGG 
GCCCTGGATA GTGGATGGCT TGGTTCTACT CAAGTTAGTT CTATGGATGA CAAGGTAATT 
AATCCAGGCA GTTCCTTGGT ATGGGACCTT TCTGTTTCAG GGACAAGTGT TACTTTAACT 
GATGCAAACG GAAAAAAGGT TAAGCCATCT GGTGGTAACG CTAATGGAAT AGCTGAGGGA 
GGCTATGCAT GGGCGTTTGA ATTTAATAAC GGAACGTTTA GATTTAAGGG AACCGGAGCA 
GATACCGTGA CTTTAGCTAG TAATAAAGGC TCTGATAACA AGTTTAGGGC TTATAAAAAT 
GATACGGTAA CAGGTTCACC AGCGGGTTAT CCTTCTAATT TTACTCTGTA CAAGTTAGAT 
AGCGGTAATC CGTCAGGACC TGTAAAAGTA GCAACACCGC AAGCAAGCCC GGCATCTGGA 
GCAGTCGTTT CCGGAAGTGT TATTACACTT TCCTGCGGAA CACCGAGTTC GAGCATTCAG 
TATCGAGTTA CGACTGTTTC ACCTTCTGCG ATTTGGGTGG ACTACGCAGA TCCTATCATA 
ATTAATGGTG ATACAACAAT TGAGGCAAAA GCAACAGCAC CGGATTATGA AGAAAGTGAT 
ATCGCTGTAT TTCATTATGT GATTTCTGAG GATCCAGTAG ACCCAGAAAT ATTTGATCCG 
ATTCCTGTAA TTCCGGAAGG TGCAATATCG GTATTAGAGG CAAGTAAACT AAGCAGCGGT 
CAAGTTACTA TAGTGGGACA GCTTGTTTAC CGGTACGGTG ATTATGACAA GGTAACGACT 
GTGATTCTGG AAGATGTCAT TGATGGGAAA ATTTATGCAC TGCAGATATA TAATACTCTA 
TCCGAGTATA AGATTGGTGA TGTTGTAAAA CTAACAGGAA CAATGGGAGC ATATGGGGGA 
GTTCCTCAGT TAACCAACCC TACAAAAATA GAAATACTCA CACCGGCAGC AGATACTCGG 
TTGATTCCTG CACAGAAATT CACTTCATTT AATGATTTGA TGGCTGTAAA GGATTCCTTG 
CTATCGGAAT GGGTGTTAAT TAAGGGTGTA ACACTTGGTA CCTATAGCAG CACCGCAAGC 
ACAAAGGTTA CGGACAGCTA TGGAGGTAGC ATGGATATAT ACCGTGCAGC GACCTATCCA 
AGCGGCGTAA CAGCCGGAGA AAAGGTTGAT TTGTATGCAT GTGTATCCAA ATATACTACG 
ACTGATCAGC TTCGTGTCGG TTCCAGCACT GATTATGTTG TAGCAAATGA TACGAAAGTT 
CCAACGATAA CAATGCCTAC TTTTGAGAAT GCGGAGTTAG GAATAGATTA TAAGATATCA 
ATAACAATTA CAGATAATGT AGCAGTATCC GATGCAGATT TAACCTATAC AGTGAATCAG 
GTATCTACTA AGGTGGCATT GGTACAGAGT ACAACTGATA ACACGAAATG GGAAGCAACC 
ATTCCTGGAG GCACATTTAC TAAAGATGTT TCCAGCTTTA CCGTTTTTGT AACTGCCAGA 
GATAGGGCAG GAAATGAGGC TACCAGTGAC GTAAAAACAA TTTCTGTAGC AGACGCACCT 
CAGGTTACGA AAGTAACACC TGACCGTAAT GAATATACAG GGGTTGAAAA GAGACCGCTT 
ATTAGCATAA CTGCAACTAA TCTTGGAACG GCTCCAACCG CAAAGCTTAC ACTAAAGACA 
GGAGCGACGG TTATATTAGA CGCTGCCACT ATGAGTTATT CTGGCGGAAC CTTTTCCTAT 
AAGCCATCTA AGGATCTGGC TGATGCATCT TATACAGCAT CCGCAGTGAT TACCCGTGCA 
GATGGAAAAG CCATAACCTA TGAGTGGCCA TTTACCGTAG GTACGCCAAA TTATAAATTA 
TACTTTGGAC AATTACATAG TCATACAACT TATTCGGATG GTTCTGGCTC TTTAGATGAA 
GCACTTAATT ATATTAATAA AATTAGCAAG GGTGATAATA TTGATTTTGT TGCATTTACA 
GATCACTCAA ACTATTTTGA TAAATCGGGT GCGGCTAACC CAGAAGCTTC ACTTTTTAAT 
AAGAGCTTAA TGACGGCAGA AAGCCAAAAA ATATGGAATG AATACAAGAG TAAAATTGCT 
AATTTTAATG CATCTCCAAC AAACAGAGGA GTGATTGCTC TCGGTGGTTT TGAAATGACT 
TGGTCTGGCG GACCGGGACA TATGAACACC TGGAACACAG AAGGTATTGT CAGCCGTAAT 
AACGCAACCT TAAACAGCAA AACTAATGAT GCCGGAATGA AAGCTTATTA TGCTTTATTA 
AGCAAACCGG AAGGTGTTAA TAGTGTTAGC CAGTTTAATC ACCCAGGTAA AACATTTGGT 
ACCTTTAGTG ATTTTGCTTA CTGGGATCCT GCTGTTGATT CCCGTATTAC TTTACTTGAA 
GTTGGTAATG GAGAAGGTGC AGTCGGCAGC GGCGGATATT TCCCATCCTA TAGTTATTAC 
ACCATGGCAT TGGATAAAGG ATGGCATGTA GCGCCTACAA ATAATCAGGA TAATCATAAG 
GGTAAATGGG GAAATGCAAA CGATGCCCGT GATGTTATAA TTACCGGTGA CTTTACGGAA 
CAGGGTATTT ATGATGCATT AAAGGCTCGT AAAGTATATG CTACGGAATG TAAGAATTTA 
GAGATTACCT ATACTTTAAA TGGTGAATTA ATGGGAAGCA TCATAAATGA GGTACCTAAG 
AGCCTCGATT TAAAGGTAAT ATTAAATGAT GCGAAAGATG TAATTCAAAC AGCAGAGGTA 
ATTGCAAACA GCGGACGTAT TATCCATACA TGGGATGTAA ATGCTCAGAG TAAGGAACTT 
AGCGTAACAC TGAAACCGGA CTATAGCTAC TATTATATCA GAGTAAGAGA AAAGGATGGA 
GACATTGCAG TAACGGCACC AGTATGGGTT GGCAGTACAA AATTGCTTGG AATTTCTAAT 
GTAGAAAGTA GCACAAATAC ACCAGTTACC GGAGAAAAAA TGACGGTTAT AACAACCTTG 
TTTAACAATG AGTCTGCAGA TGCAACGATT AAATCTTTGA CTTATAAGTT GGATGGAACT 
GTTATTGATC ATAAAACGGA TGTAGGTAAA ATTGCAAAAG GAACGACTGT TACAAACAAT 
TATGATTTCA CACCTGAAAA AGCCAAAATG CAAACCATAA CCGTTGAGGC TGTTCTAGCA 
ATTGGTGGTC TTGACTATGC CTTTACAAAG GATCTTAGTT TAGATATTAG AGATGCGAAT 
AAACTGGTAT ACATAGGAAT TGACGGAAGT CACTTCAATG AATATGTAGC TGGAAATTAC 
AAAGATAACA TGGGTAACTT CAGCTTGCTT GCAGCACAAA GCAATGTAAG GTGCGTAATT 
CTGAATACTA GTGATGAATT AATAGCGGCA GCTAAAAATA CAAATGGTAA ATATAAGATG 
CTTATATTAA CAGCACCAAG TCGCCGAAAT GGTACTGCGT TAAGAGAACC ATATGCTACA 
TATTCAGATA AAGAAATAGA AGCCATTAAA GGTTTCTCAG AAGCAGGCGG AAGTTTAATA 
CTCTGCGGAT GGTCAGATTT ATACGAAAAT TACAAACAAT TCCCGGCACA AGACCATATG 
GCAGCACAAC AGAATAAGTT ACTAAAAGCA ATTGGAGCGT CTTTACGTGT CAGTGATGAC 
GGTGCTTATG ATGATGTATT AAATGCAGGC GGAAGTGAAG CAAATAAAGC AAGACTATAC 
TTAACAACTT ACAATTGGAA TAATCCATTT ACAAAAGGTA TTGTATACGA TGCGGCGAAT 
CCAAATGATA ACAAGTACAC ACAGCTCTTC AGTCAGTATG GTGGCAGTAC AATTCATGTG 
GTAGATAAGA ATGAAAAACC TATTTCTACA TTACCAGCTA ATGTCTCACC TATAGTATAC 
GGACATAGTT CTACCTACTC AAAGGATTGT GATAATGACG GTCTAGGCGG GAGTGCTATT 
CCAAAATATG AATATGCAAA AGGTGATAAT CGTCTGATGG TGCTTGCCAG CGAGATTGTT 
ACACATGCTA ATGGAACTCA GTCACTGGTA ATTGTAGACG GTGCAGCATT TATGAGTAAC 
TTTGAAATTC AAGCTACAAT TTCAGATACC AACGCTGAAT TAAATTACTC AAACTATACA 
ATTTTACAGA ACGTAATCAA GTATGTAAAT CCGACTCAAA TTGATAAGAT AGTGGATATA 
CAAAAAGAGT CTGAAGAAGG TGTTAAATTT ACGGTAGAAG GTATCGTAAC CTCCAATGCT 
TCCGGATATG ATAAGGCTAC AGCATTTTTT GACTGTATCT ATCTACAGGA TGAAACAGCT 
GGTGTTAATG CATTCCCAGT GGCAGGAGAC TTTAAAGTTG GTCAGAAGGT TCGTATTACG 
GGAACAACGT CTTCTTATCA GGGCGAAAGA CAGTTAAATG TTAGCAGTAT ATCCTTGGTA 
GATAGTAGTA TTACAAAAGT AGAACCTAAA GAAGTAACTG CAAAGGAGAT TAATGACAGA 
ACATACCTTG GAAGCTTTGT AAAGATTTCA GGAAAGGTTA CAAAGATTGA ACTTGCAAAC 
GGAGCTGTAC AAACGATTCT TGTTCAGGAT GACGCAGGAG ACATTGCTCG GATATTTATT 
GACGGTTATA TTACAACCGA CAAGGAAATT GAGGATTTAG CAGTTGGAAG TTTGATTACT 
GCTGTTGGTC TGTCCTCTTA TGATAATACC TTTGATGGTC TTGCAGCGCG TATTCGTATT 
AGAGATCGTG GGGATATTGT ATGTAAGCGT GATGAAATAC CAACACCAAC GCCAACACCA 
ACGCCAACAG AAACACCAAC ACCAACGCCA ACAGAAACGC CAACAGAAAC ACCAACACCA 
ACAGCAACAC CAACACCGAC AGCAACACCA ACGCCAACGA TTGATAAGAT AGTGGATATA 
CATAAAGCAG AAGAAGGTGC TAATTTTACG GTAGAAGGTA TCGTAACCTC CAATACTTCC 
GGATATGATA AGACTACAGC ATTTTCTGAC TGTATTTATC TACAGGACGA AACAGCTGGT 
ATTAATGTAT TCCAAGTGAC TGGAGACTTT AAAGTTGGTC AGAAGGTTCG TATTACAGGA 
ACAACTTCTT CTTATCAGGG TGAAAGACGG TTAAATGTTA GTAGTATATC TTTGGTAGAT 
AGTAATATTA CTAAAGTAGA GCCTAAAGAA GTAACTGCAA AGCAGATTAA TGATAGCACA 
TACCTTGGAA GCCTTGTAAA GATTTCAGGA AAGGTAACTA AGATTGAACT TGAAAACGGA 
GCGGTACAAA CGATTCTTGT TAAGGATAAC GTAGGAAATA TTGCTCGTAT CTTTATTGAC 
AGTTATATTA CAACCGACAA GGAAATTAAG GATTTAGCGG TTGGAAGTTT GATTACTGCT 
GTTGGTCTGT CCTCTTATGA TGATACCTTT GATGGTCTTG CAGCGCGTAT TCGTATTAGA 
GATCGTGGGG ATATTGTATG TAAGCGTGAT GATACACCAA CACCAACGCT GAAACCAACA 
CCAACACCAA CAATACCTAC AACGCCAGAA ACACCAACAA CACCTACAAC GCCAACAACG 
ACGCCAACAC TAACGCCAAC ACCGAAGCCT GAGGGTAAAA CTGTAATAAC AGCTGATAAA 
GCAGAAATTA CCATTGAGGG TGGAAAAGTA ATTGTAAAAA TAAAAATTGA TGAAGAAGTT 
CTGAAAGATA CGGTAAAAGA CGGTAATAAA AACATTACAA TTTCATTAGG TAAAGAAGTA 
TTAAAGGATA TTTTAACGGA TAGTCAGATT AAAATAGGTA TTGTAATCGA CTTGTCCATT 
CCTACTGTTA AAGATGCAAC TGTGAATAAT ATTGTATTAA GTAAAGATGC ATTGTTATTA 
GCAAAGAAAT CTGGACAGAA GCTTACTATC AATGTAGCAA TTGGAAAGAG TTACACAGTT 
GATATTCCTG TATCTGAACT GAAGAAAGTT GCATTTGTTT CAAAAGATCT GAATATAGCA 
GTTACTTTGA AGAAAGATAC GAAAGCAGCT ACAAAATCTG TAGGAGTCCT TTCTGTAGGA 
ACGGAAGGTA AGTTATCAGC AGGTATGGTA ATTACAGTAC CTGTAAAAGG TGCACTTTCC 
TTATCAGCAG GTGACAAGGT ATATATTTAC CATAAGAATG CTGAGACCGG TGTATTAGAA 
GAAATGCCAA ACAATCCAAT AACTGTAGCA GCGGATGGTA CCTTAAAACT TTCTACCCTA 
AGCGGAGGAG ATTTTGTTAT TTGCACAGAG AAGGTAAAGG ATGCAGTTAC ATTAGTAGAC 
AGAGTGAAAG TATCCGTTGA ATCTACCGTT GCAAATGGTA AAAAAATCAA TGTAAAGGTA 
ACTCTTCCAC AGGAATTAGC ACGAGTTACT TCATTTACAA AAGGTGATCC GGTTGGTCAG 
GAAGAAGTAA AGGTAACATA TAAAGTAAGC GATAAGAATA TTGCAACTGT ATCCAGTAAT 
GGAACCATTA CTGCTAAGAA GAAAGGAACT GTTACGTTAA CAGTTGAAGT CACTTTAGAG 
AATGGACAGA AGAAGAACTT TAGCAAAACT ATCAAAGTAA ACTAG 

 

Protein sequence

MKKNAKRYLA VLLSIIMVFS ISPVKSYANE AASTFVRINS AAELTTDKYV MVVNTGYAVG 
ALDSGWLGST QVSSMDDKVI NPGSSLVWDL SVSGTSVTLT DANGKKVKPS GGNANGIAEG 
GYAWAFEFNN GTFRFKGTGA DTVTLASNKG SDNKFRAYKN DTVTGSPAGY PSNFTLYKLD 
SGNPSGPVKV ATPQASPASG AVVSGSVITL SCGTPSSSIQ YRVTTVSPSA IWVDYADPII 
INGDTTIEAK ATAPDYEESD IAVFHYVISE DPVDPEIFDP IPVIPEGAIS VLEASKLSSG 
QVTIVGQLVY RYGDYDKVTT VILEDVIDGK IYALQIYNTL SEYKIGDVVK LTGTMGAYGG 
VPQLTNPTKI EILTPAADTR LIPAQKFTSF NDLMAVKDSL LSEWVLIKGV TLGTYSSTAS 
TKVTDSYGGS MDIYRAATYP SGVTAGEKVD LYACVSKYTT TDQLRVGSST DYVVANDTKV 
PTITMPTFEN AELGIDYKIS ITITDNVAVS DADLTYTVNQ VSTKVALVQS TTDNTKWEAT 
IPGGTFTKDV SSFTVFVTAR DRAGNEATSD VKTISVADAP QVTKVTPDRN EYTGVEKRPL 
ISITATNLGT APTAKLTLKT GATVILDAAT MSYSGGTFSY KPSKDLADAS YTASAVITRA 
DGKAITYEWP FTVGTPNYKL YFGQLHSHTT YSDGSGSLDE ALNYINKISK GDNIDFVAFT 
DHSNYFDKSG AANPEASLFN KSLMTAESQK IWNEYKSKIA NFNASPTNRG VIALGGFEMT 
WSGGPGHMNT WNTEGIVSRN NATLNSKTND AGMKAYYALL SKPEGVNSVS QFNHPGKTFG 
TFSDFAYWDP AVDSRITLLE VGNGEGAVGS GGYFPSYSYY TMALDKGWHV APTNNQDNHK 
GKWGNANDAR DVIITGDFTE QGIYDALKAR KVYATECKNL EITYTLNGEL MGSIINEVPK 
SLDLKVILND AKDVIQTAEV IANSGRIIHT WDVNAQSKEL SVTLKPDYSY YYIRVREKDG 
DIAVTAPVWV GSTKLLGISN VESSTNTPVT GEKMTVITTL FNNESADATI KSLTYKLDGT 
VIDHKTDVGK IAKGTTVTNN YDFTPEKAKM QTITVEAVLA IGGLDYAFTK DLSLDIRDAN 
KLVYIGIDGS HFNEYVAGNY KDNMGNFSLL AAQSNVRCVI LNTSDELIAA AKNTNGKYKM 
LILTAPSRRN GTALREPYAT YSDKEIEAIK GFSEAGGSLI LCGWSDLYEN YKQFPAQDHM 
AAQQNKLLKA IGASLRVSDD GAYDDVLNAG GSEANKARLY LTTYNWNNPF TKGIVYDAAN 
PNDNKYTQLF SQYGGSTIHV VDKNEKPIST LPANVSPIVY GHSSTYSKDC DNDGLGGSAI 
PKYEYAKGDN RLMVLASEIV THANGTQSLV IVDGAAFMSN FEIQATISDT NAELNYSNYT 
ILQNVIKYVN PTQIDKIVDI QKESEEGVKF TVEGIVTSNA SGYDKATAFF DCIYLQDETA 
GVNAFPVAGD FKVGQKVRIT GTTSSYQGER QLNVSSISLV DSSITKVEPK EVTAKEINDR 
TYLGSFVKIS GKVTKIELAN GAVQTILVQD DAGDIARIFI DGYITTDKEI EDLAVGSLIT 
AVGLSSYDNT FDGLAARIRI RDRGDIVCKR DEIPTPTPTP TPTETPTPTP TETPTETPTP 
TATPTPTATP TPTIDKIVDI HKAEEGANFT VEGIVTSNTS GYDKTTAFSD CIYLQDETAG 
INVFQVTGDF KVGQKVRITG TTSSYQGERR LNVSSISLVD SNITKVEPKE VTAKQINDST 
YLGSLVKISG KVTKIELENG AVQTILVKDN VGNIARIFID SYITTDKEIK DLAVGSLITA 
VGLSSYDDTF DGLAARIRIR DRGDIVCKRD DTPTPTLKPT PTPTIPTTPE TPTTPTTPTT 
TPTLTPTPKP EGKTVITADK AEITIEGGKV IVKIKIDEEV LKDTVKDGNK NITISLGKEV 
LKDILTDSQI KIGIVIDLSI PTVKDATVNN IVLSKDALLL AKKSGQKLTI NVAIGKSYTV 
DIPVSELKKV AFVSKDLNIA VTLKKDTKAA TKSVGVLSVG TEGKLSAGMV ITVPVKGALS 
LSAGDKVYIY HKNAETGVLE EMPNNPITVA ADGTLKLSTL SGGDFVICTE KVKDAVTLVD 
RVKVSVESTV ANGKKINVKV TLPQELARVT SFTKGDPVGQ EEVKVTYKVS DKNIATVSSN 
GTITAKKKGT VTLTVEVTLE NGQKKNFSKT IKVN