| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1136 |
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| Symbol | |
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| ID | 5741971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 1430300 |
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| End bp | 1432699 |
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| Gene Length | 2400 bp |
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| Protein Length | 799 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 641292241 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001558253 |
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| Protein GI | 160879285 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.415908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGACA AAATAAAAAT AAAGATAATT TTAATCATGG GAGTAGTATT ATCAATTACC
ATAATTGCTA ATTATACAAT TAGTGACCAT ATATTGAAGG CTGAATTAGA GAAAGCATTT
TCAAAGGAAG TGTTATCTAC TACGCGAGGA TTACGCGCTC AGGTTGTACG AATGCTATAT
GCGGGTATAA AAATAGATGA GATTGATGGA TTCGATGAGC AAAGTATAGC TGCTTTTAAA
GAAACAGAAA ATTTTAAATT TGCTATTACC TTTGATTTGG ATGGGAACAT TTTATTTCAT
AGCGGTAATC AGTATAATGA GATTTCTGAG GATATCATTG GCTATTTAAG AAGTTTGGAT
CATATGGATG AAGATATTAA AACGATCGAA TCTAATAATG AGGAATATTA CATATGTAGT
CTGCCTGTCA CAGTAAGAGG TGAAACTAAT TCTTATATTG TTGCAGGATA TTGCAGCAGA
AGTTATGAAA GAGCAGTAAA ATTTCTTTCT TTTTCAACAG TTGTTATAGC TATACTAATA
TTATTGGTAG CTATGGTTAT TAGTATTTAT TTATTAAATC GTTGGATTAC GAAACCTTTA
ATTAAGCTTC ATAAAGCGAC GAAAGATATC TTAGTTAATG GCATGGAAGG GGTATCAAAG
GTTGAGATAG ATCAAAAAGA TGAAATAGGA AAGTTGGCGG ATTCCTATAA TCAGATGATT
GATTTTATAG GACAGAGTAC AGTATCCAAG AGCTATTTAA GAAATGTTAT ATCTAATATT
TCCGATGCGT TGGTCGTAGC AGACGCAGAT TTTTGTATCG AAACTGTAAA TGAAGCAACA
AAAAAGATGT TTGGATATTC AAAAGAGGAA TTGGTTGGGT CTTCGGTATC CATATTTTTT
CCTCAAATTC AAGAACAAGT AATAGAACAT TGGAAAAATA CAATCATTAC GCATCGACAA
TATAGTGATT ACGAGGTGAT TATTCACACA AAAGAGAAAA ATGCAATTCC GGTATTAATT
AGTAGTACGG TAATGACAGA AGATAACTCA GGGCAAGTTC ATTTTGTATG TATAGCAAAG
GATATCTCGG AGCGTAAAAA ATCCGAGGAG TCGATACGTT ATCAGGCAAA TCATGACATG
TTAACTGGGC TTAGCAATCG ATATGCACTT GAAAAGGAAA TCCAAGCGTG TTCGAATATG
ATATTATTAT ATCCAGAAGA GATGTCGATG TTTTTGTTTC TAGATTTAGA TAAATTTAAA
ATAGTCAATG ATGTATGTGG TCACCATGCT GGAGATGAGT TGATTAAGCA TCTCACTTTA
ATGATGAAAC AAAATCTTAG AGAACAAGAT ACCCTTGCAC GTATTGGTGG AGATGAATTT
GGCGTGTTAT TAAACGGAAT AAGTCAAGTG GAAGGCCTAG AAATTGCAGA AAATCTCTGT
GAGACAGTGA AAAAATTCCG TTTTGTATGG GAAGAAAAAG TATTTACCCT AGGTGTCAGT
ATTGGTGCTG TGATTATAAA TAGAGATTTA TATGAGGTAT CAAAAGTGAT ATCCGCAGCA
GATCAAGCAT GTTATATCTC AAAAGAAAAC GGTGGAAATC GAGTACAACT ATTTAGCGAA
TCAGAACAGG AATTTTCTCT TAGAGAGGAA GAAATGCAAG TAATGCCAAG CATAACAAAG
GCATTTGAGG AAAATCGTTT TCTTTTGGTT TATCAAGACA TCGTTCGAGT ATCAGATAAG
GTTTTAAGTG GGTATGAAGC ATTGATACGT TTGAAAGATG AACAGGGGCA GCTAGTATCT
CCTGGAACAT TTCTACCAGC AGCACAGCGT TATAATAAAT TGACTGATAT TGATCGTTGG
GTAATAACAA ACTTTTGTAA AAACTATGAT TTCCATCAGA TTGGTTCCAT AGAGAATGAT
TTCATATATA ACATTAATAT TTCAGCAACA TCAATTAATG CAGAAGGCTT TCTTGAATTT
ATTTGTCATC AGTTTGAAGA ACATCAGGTA CCACCACAGC GTGTATGTTT CGAGATTACT
GAAACATCTG CGGTTTCAAA TTTTGTGAAA GCGAAAGAGT TTATTCAAGA ACTTAAGAAG
TTAGGTTGCA GATTTGCTCT TGATGACTTT GGTAGTGGTT TGTCTTCCTT TACTTATTTA
AAATATCTAC CAGTCGATTA TATAAAGATA GATGGAATTA TTGTCAACGA CATCGATACG
AACAAAATAG ATTATGCCTT GGTTTCTTCT ATTAATGAAA TTGCTCATCT AATGGGAATG
AAGACAATAG CAGAATATGT AGAGAATGAG GATATTTTTA ATTGTTTACG TGAGATAGGC
GTTGATTATG CGCAGGGATT TTGGTTAGGT GAACCAAAGG GGTTATCTAA TATGGTATAA
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| Protein sequence | MLDKIKIKII LIMGVVLSIT IIANYTISDH ILKAELEKAF SKEVLSTTRG LRAQVVRMLY
AGIKIDEIDG FDEQSIAAFK ETENFKFAIT FDLDGNILFH SGNQYNEISE DIIGYLRSLD
HMDEDIKTIE SNNEEYYICS LPVTVRGETN SYIVAGYCSR SYERAVKFLS FSTVVIAILI
LLVAMVISIY LLNRWITKPL IKLHKATKDI LVNGMEGVSK VEIDQKDEIG KLADSYNQMI
DFIGQSTVSK SYLRNVISNI SDALVVADAD FCIETVNEAT KKMFGYSKEE LVGSSVSIFF
PQIQEQVIEH WKNTIITHRQ YSDYEVIIHT KEKNAIPVLI SSTVMTEDNS GQVHFVCIAK
DISERKKSEE SIRYQANHDM LTGLSNRYAL EKEIQACSNM ILLYPEEMSM FLFLDLDKFK
IVNDVCGHHA GDELIKHLTL MMKQNLREQD TLARIGGDEF GVLLNGISQV EGLEIAENLC
ETVKKFRFVW EEKVFTLGVS IGAVIINRDL YEVSKVISAA DQACYISKEN GGNRVQLFSE
SEQEFSLREE EMQVMPSITK AFEENRFLLV YQDIVRVSDK VLSGYEALIR LKDEQGQLVS
PGTFLPAAQR YNKLTDIDRW VITNFCKNYD FHQIGSIEND FIYNINISAT SINAEGFLEF
ICHQFEEHQV PPQRVCFEIT ETSAVSNFVK AKEFIQELKK LGCRFALDDF GSGLSSFTYL
KYLPVDYIKI DGIIVNDIDT NKIDYALVSS INEIAHLMGM KTIAEYVENE DIFNCLREIG
VDYAQGFWLG EPKGLSNMV
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