| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1086 |
|---|
| Symbol | |
|---|
| ID | 5741921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 1372561 |
|---|
| End bp | 1373088 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641292191 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001558203 |
|---|
| Protein GI | 160879235 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0623154 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTAG GTGAGGGGGG GAGTGCTAGA TTGCCAGATT TTCGAAATGT ATCCAAAGAG
GCAGAAGTAA TCTATCAGAA CTATGTTGAT ATGGTATTCA GGATTGCTAT TCAAAATGTG
AGAAATATTA TGGTGGCAGA GGATATCATG CAGGAAGTTT TTGTTCGATT ATTACAACAA
AATTGGGAGT TAATCAGTGA AGAACATTTA AAAGCTTGGC TAATACGCGT TACGATCAAT
TTATGTAAAG ATCATTTTAA ATCAGCTTGG TTTCGTAAAC GTTCTTCATT AGAGGAATAT
GAGGATTATG TCTTAGATGG ATTTCAGTCC ATCAGGGAAA AAGAGTTGTA TCATAAAATA
CTTAGCTTAC CAAAACAGCA AGGTATTCTT ATGTATTTAC ACTATGTTGA AGGGTATACC
TACATTGAAC TATCAACCAT CTTTAATTTA AATCCGAATA CAGTAGCAGC TAGGATTAGG
AAAGCAAAGG GAAAATTAAA AGAATTTCTC GAGGTTGATC TTGATTAA
|
|---|
| Protein sequence | MNVGEGGSAR LPDFRNVSKE AEVIYQNYVD MVFRIAIQNV RNIMVAEDIM QEVFVRLLQQ
NWELISEEHL KAWLIRVTIN LCKDHFKSAW FRKRSSLEEY EDYVLDGFQS IREKELYHKI
LSLPKQQGIL MYLHYVEGYT YIELSTIFNL NPNTVAARIR KAKGKLKEFL EVDLD
|
|---|
| |