Gene Cphy_0960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_0960 
Symbol 
ID5743901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand+ 
Start bp1227082 
End bp1227720 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content36% 
IMG OID641292069 
ProductDNA-(apurinic or apyrimidinic site) lyase 
Protein accessionYP_001558081 
Protein GI160879113 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAATG AATCAATCCA ACAGATATTA ATAATATTAG ATAAGGAATA CGGAACCACC 
AAGGAAGGAT TTTTACACTA CGCAGATTGG CAACTATTAC TCGCCATCAT GCTAAGTGCG 
CAAAGTACGG ATAAACAAGT AAATGAGGTG TTACCGGGTT TGTGGAATAG ATTTTCTTCT 
ATCTGTCAAA TGGCAGAAGC ACCAGTAGAG GAAATAGAAG ATCAGATTAG ATCAATTGGG 
TTATATAAGA GTAAAGCTAA GAATATGAAG CAATGCTGTA AACAAGTCAT CGATGAGTAT 
GGTGGTAAAG TTCCAACAAC CATTAATGAA TTAGTAAAGT TATCTGGAGT TGGAAGAAAG 
TCAGCTACTT TATTTTTAGC AGACGCTTAT GATATACCAG GGGTAACGGT GGATACCCAT 
GTTTTGAGAA TTGCAAAGCG ACTCGGCTGG GCGGAAGGAA AAAATCCAGT ACAAGTGGAG 
CAAGAATTGA TGAAGATACT TCCGAAAGAA AACTGGAATC GTATTAATTT TCAATTAATC 
TATCATGGGC GGAGTGTATG TACTGCAAGA AAATGTTATT GCGAACGATG TTTATTAAAC 
CAATGGTGTG AAAAGAAAAG ATGTTGCTAT AGATATTGA
 
Protein sequence
MINESIQQIL IILDKEYGTT KEGFLHYADW QLLLAIMLSA QSTDKQVNEV LPGLWNRFSS 
ICQMAEAPVE EIEDQIRSIG LYKSKAKNMK QCCKQVIDEY GGKVPTTINE LVKLSGVGRK 
SATLFLADAY DIPGVTVDTH VLRIAKRLGW AEGKNPVQVE QELMKILPKE NWNRINFQLI 
YHGRSVCTAR KCYCERCLLN QWCEKKRCCY RY