| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0662 |
|---|
| Symbol | |
|---|
| ID | 5743778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 862473 |
|---|
| End bp | 864716 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641291774 |
|---|
| Product | glycoside hydrolase family 3 protein |
|---|
| Protein accession | YP_001557788 |
|---|
| Protein GI | 160878820 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.409181 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAG ACCTGATTAA ACAAATGACA CTGGAAGAAA AGGCAGGATT GTGCTCCGGT
GCAGATTTTT GGCATACGAA AGCAGTGGAA AGACTAGGCA TTCCGGCCGT GATGGTAACG
GACGGCCCGC ATGGTCTACG TAAGCAGGAA GGGGAAGCCG ATCATCTCGG TCTGAACCAG
AGTGTTGCTG CTGTATGCTT TTCTCCAGCG TGTGCGAGCG CTTCCAGCTT TGATGAGAAT
TTATTATATC GGATGGGCAG TGCTCTTGGT GAAGAATGCA GATCAGAGAA TATAGCAATT
TTACTGGGAC CTGCCGTTAA TATTAAGAGA AGTCCGCTTT GCGGTCGTAA TTTTGAATAT
TTCTCAGAGG ACCCTTATCT GACTGGTAAG CTTTCTTCAG CACAGATCAA GGGAATTCAG
GAGTGGGAGG TTGGTACCAG CCTAAAGCAT TATGCAGTTA ATAATCAGGA GACCTACCGC
ATGACCTGCT CCTCAGAGGT GGATGAACGT ACACTGCGTG AAATCTACCT CTCGGGCTTT
GAGATGGCTG TGAGAGAGGC AAAGCCTTGG ACCGTAATGA GCAGCTATAA CAAAATTAAT
GGAGAATATG CCAGTGAAAA TAAAAAATTG CTAACGGATA TCCTGCGTGA GGAATGGGGC
TTCGAGGGAT TCGTAATGTC GGACTGGGGA GCTGTTAACG ACAGAGTAAA GAGCCTTGAG
GCAGGACTGG AGCTTGAGAT GCCCTCTTCT AATGGTATTC GTGATGAACA GATTGTGAAA
GCAGTCAGAG AAGGCAAGCT CTCGGAGGAA TTATTGGATC TGGCTGTGGA ACGCATTCTT
AAGGTTATAT TCAAATATTC CAAGGCCGAT GCTACCGATA CACATTATGA CAGAGAGGAG
CATCACAAGA TAGCAACAGA TATGGCAAAG GAATGTGCTG TTCTTTTGAA GAATGAAGGT
GCGCTGCCCC TAAGCCGTCA AACAAAAGTT GCCTACATAG GTGCATTTGC CAAAATACCG
CGCTATCAGG GAGGAGGCTC CAGCCACATT CATGCCAGCA GGGTAACGAA TGCATTAGAT
ATCGGTAAGG ATAAAAATCC TAATATAATT TATGCGGAGG GTTTTCCACA TGACAAGGAT
ATGGAAGATC AATCTCTTTT TGAAGAAGCA GTCAAAGCAG CTTCCGAAGC GGATGCAGCC
GTTATCTTTG CCGGATTACC CGAATCCTTT GATTCCGAGG GTATTGACAG AAAACATATG
AGGCTGCCGG AATGTCAGAA CCGACTCATT GAGCAGATCG CGGGAGTACA GAAGAATACC
ATTGTAGTTC TTCATAATGG CTCTGCTGTG GAAATGCCCT GGGCAGATAA GGTGAATGCT
ATTCTTGAAA TGTTTCTTGC AGGTCAGGGA GTCGGTGAGG CAACAGATGC CCTGTTATAT
GCAGATGCAA ATCCCTGTGG CAGACTGGCA GAAACCTTTC CGCTAAGGCT TGAGGATACC
CCGTCATATT TGAATTTCCC TGGTGATGGC AAAAAGGTCG TTTATGCGGA AGGGATTTAT
ATTGGGTACC GTTATTATGA GGCTAAAAAA ATACCGGTAT TATTCCCCTT TGGACATGGA
CTGTCCTATA CCGAATTCTC TTATCATGAT ATACAGGTAA CTCGTGGTAA TTTTACAGAG
GGTGAGAGTA TAACTGTAAC GGCACAGATC ACCAATTCAG GGAAGATGGT AGGAAAAGAA
GTAGTGCAGC TGTATGTCGG CGACCGTACC GGCACTCCAG GAAGGCCTGT AAAGGAGTTA
AAAGGATTTG CCAAGGTAGA GCTTAAACCG GAAGAGACGA AGCCGGTAAC CTTTGAAATC
GATGCCCGTT CTCTATCTTG GTATAACGAA GAAATCGGAG ACTGGTACGC TGCCGGTGGA
ACCTATGAGC TTTTACTGGC TCATTCCTCT GCAGATATAC GTCTATCGGA GAAGGTTGAG
TTCACTCCTG TGAGGGAGAT TCCTTTTCGG GTAGATGAGA ATACAACGAT AGGCTCATTG
TTAAAGAACC CAAAAACCGC ACCGATTATG TCGATGATGC TTTCGAAGTC TAATGGAGGC
AATGCATCAG GCTTTGGCAG TTCAAATGAG ATGCTGAAAG AAATGACAGG GGGGCTGCCG
CTTAGGGCAC TGTTTGGATT TTCGAAGATT ACAGAGGATC AGATGAAGGA ATTAATCTAT
GTATTAAAGG AGCAGCTGAA ATAA
|
|---|
| Protein sequence | MIKDLIKQMT LEEKAGLCSG ADFWHTKAVE RLGIPAVMVT DGPHGLRKQE GEADHLGLNQ
SVAAVCFSPA CASASSFDEN LLYRMGSALG EECRSENIAI LLGPAVNIKR SPLCGRNFEY
FSEDPYLTGK LSSAQIKGIQ EWEVGTSLKH YAVNNQETYR MTCSSEVDER TLREIYLSGF
EMAVREAKPW TVMSSYNKIN GEYASENKKL LTDILREEWG FEGFVMSDWG AVNDRVKSLE
AGLELEMPSS NGIRDEQIVK AVREGKLSEE LLDLAVERIL KVIFKYSKAD ATDTHYDREE
HHKIATDMAK ECAVLLKNEG ALPLSRQTKV AYIGAFAKIP RYQGGGSSHI HASRVTNALD
IGKDKNPNII YAEGFPHDKD MEDQSLFEEA VKAASEADAA VIFAGLPESF DSEGIDRKHM
RLPECQNRLI EQIAGVQKNT IVVLHNGSAV EMPWADKVNA ILEMFLAGQG VGEATDALLY
ADANPCGRLA ETFPLRLEDT PSYLNFPGDG KKVVYAEGIY IGYRYYEAKK IPVLFPFGHG
LSYTEFSYHD IQVTRGNFTE GESITVTAQI TNSGKMVGKE VVQLYVGDRT GTPGRPVKEL
KGFAKVELKP EETKPVTFEI DARSLSWYNE EIGDWYAAGG TYELLLAHSS ADIRLSEKVE
FTPVREIPFR VDENTTIGSL LKNPKTAPIM SMMLSKSNGG NASGFGSSNE MLKEMTGGLP
LRALFGFSKI TEDQMKELIY VLKEQLK
|
|---|
| |