Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_0548 |
Symbol | |
ID | 5743462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 705501 |
End bp | 707942 |
Gene Length | 2442 bp |
Protein Length | 813 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 641291660 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_001557674 |
Protein GI | 160878706 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.237562 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAGAAAT CGTTAAATCA GAGTACAGAC ACAAACTTAG AACCGAAAAA ACTTCATAAT GTAAGTTCCA TTCTTCAGAA TGAAAGTACA ATTCTAGAGA ATGGAAGTTC CATCCAAAAG AATGGAAATG CCATTCAAAA GAATGACATT GACTTAATGC AGGATGAAAC TGCAATTAAA TATCAAAAAG ACCGCAAAAT AGGTGTTGTT CCATCGGATT TTACAAGTCC TGACGAGCTC TATGAGATTT TGCTTAAGAC CATTCGTGCC TATCACCCAT CCACTGATGT AGAGATTGTT GAGAAGGCTT ATAAAATTGC GACTTTTGCA CATAAAGATC AGTTGCGAAA ATCAGGTGAA CCTTATATTA TACATCCGCT TTGTGTAGCG ATTATTCTTG CAGAATTAGA ACTTGACAAG GAAACAATTG TTGCAGGAAT TCTTCATGAT GTTGTGGAGG ATACGGTATT AACCGTATCA GAGCTTACAA AAGAGTTTGG AGAGGAAGTA GCGCTGTTAG TGGATGGTGT TACGAAGTTA ACTCAATTAA ATTATTCAAA GGATAAGGTG GAAATCCAGG CTGAAAATCT TCGTAAGATG TTTCTTGCTA TGGCAAAGGA TATCCGTGTT ATTCTAATTA AGTTGGCAGA CAGACTTCAC AATATGAGAA CGATGCAGTA CCAGACGCCT AAAAAACAGA TAGAAAAATC CAGAGAAACG ATGGATATCT ATGCTCCAAT AGCGCAACGT CTTGGTATTT CTATGATAAA AATAGAGCTG GATGATTTAT CGCTACAGTA CCTAGAACCT GAAGTTTATA AGGAACTGAA TGAAAAAATC GCATCAAAAA AAGAAGAGCG AGAAGCTTTC ATTAATAGCA TCGTAGAGGA CGTTGGAAAA CATATCGCAG AAGCAAATAT TTCAGCAAAG ATAGATGGTC GAGTAAAACA CTTCTTTAGT ATCTATAAAA AGATGGTGAA TCAAGGGAAA ACCTTAGAGC AAATCTATGA CTTATTTGCG GTAAGGATTG TTGTGGACAC TGTAAAGGAT TGCTATGCAG CTCTCGGAGT CATTCATGAG ATGTATAAGC CGATACCAGG GCGTTTTAAA GATTATATCG CAATGCCCAA ACCAAATATG TATCAGTCTC TTCATACCAC TTTAATTGGT CCGAATGGAC AGCCTTTTGA AATACAGATT CGTACTTTTG AAATGCATCG TACTGCAGAA TATGGTATTG CAGCGCATTG GAAATACAAA GAAGGTCATG ATGGTAAAAA TACAAGAGAT ACCGAAGAAG CAAAGCTTAC TTGGCTTCGT CAGATACTTG AGTGGCAAAG AGATTTATCG GATAACAAAG AATTTTTAAG TTTGTTAAAG AATGATTTAG ATTTATTTTC AGACAGTGTT TATTGCTTTA CACCAACAGG AGATGTAAAA AATCTACCAG CTGGCTCTAA TCCAGTAGAT TTTGCCTATA GTATTCATAG TGCAGTTGGA AACAAGATGG TTGGTGCTAG GGTGAATGGT AGACTTGTAC CAATTGACTA TGTGATACAA AATGGTGATC GTATTGAAAT CATGACGTCG CAAAATTCGA AAGGTCCAAG TAGAGATTGG CTCAATATAG TTAAGAGTAC TCAAGCAAAA AATAAAATCA ATCAATGGTT TAAAACAGAG TTAAAAGAAG ACAATATCAT CCGCGGTAAG GAGATGCTTG TTGCATACTG TAAAACCAAA ACAATTACAA TGAGTGACTT ATTAAAGAAT GAGTTTATGG AAGTTGTAAT GAAAAAGTAC GGTTTTCGTG ACTGGGAATC CGTTTATGCA GCAGTAGGGC ATGGTGGATT AAAAGAGGGG CAGGTTATTA ATAAGCTGCA AGAGGTATAT ACGAAGAAGA ATCGGAAAGA AATGACTGAT GAAAAGGTTC TTGAAACGAT TGCAGATGTG AAGTTTGACC GACCAGCAGT TATGAAATCC AAAGGTGGTA TCGTAGTACA AGGAATTCAT GATGTCGCTG TCCACTTTTC AAAGTGTTGC TCTCCAGTAC CAGGTGATGA AATCGTTGGA TTTGTTACAA GAGGACGTGG AGTTTCTATA CATCGTACGG ATTGTATTAA TGTGATTAAC CTTCCATATG AAGATAGGGA ACGATTAATT GATGCTGAAT GGAATATACC TGCGGATAAG CAAAATTCCG GGCTATATAC TGCTGAGATT AAAATCTATG CAAACAACCG GAATGGAGTT TTACTTGATG TATCAAGAAT TTTTACGGAA AATAAGATTG ATGTTATCTC TATGACGGTA AGAACGAGTA AACAAGGGAC CGCAACTATT AGTGTGGGGT TTGAAATAAA TGGAGTGGAG CAGTTGCATT TCATTATTGG TAAACTTCGC AGTATTGAGA GTGTAATTGA CATTGAACGT ACTACAGGTT AA
|
Protein sequence | MEKSLNQSTD TNLEPKKLHN VSSILQNEST ILENGSSIQK NGNAIQKNDI DLMQDETAIK YQKDRKIGVV PSDFTSPDEL YEILLKTIRA YHPSTDVEIV EKAYKIATFA HKDQLRKSGE PYIIHPLCVA IILAELELDK ETIVAGILHD VVEDTVLTVS ELTKEFGEEV ALLVDGVTKL TQLNYSKDKV EIQAENLRKM FLAMAKDIRV ILIKLADRLH NMRTMQYQTP KKQIEKSRET MDIYAPIAQR LGISMIKIEL DDLSLQYLEP EVYKELNEKI ASKKEEREAF INSIVEDVGK HIAEANISAK IDGRVKHFFS IYKKMVNQGK TLEQIYDLFA VRIVVDTVKD CYAALGVIHE MYKPIPGRFK DYIAMPKPNM YQSLHTTLIG PNGQPFEIQI RTFEMHRTAE YGIAAHWKYK EGHDGKNTRD TEEAKLTWLR QILEWQRDLS DNKEFLSLLK NDLDLFSDSV YCFTPTGDVK NLPAGSNPVD FAYSIHSAVG NKMVGARVNG RLVPIDYVIQ NGDRIEIMTS QNSKGPSRDW LNIVKSTQAK NKINQWFKTE LKEDNIIRGK EMLVAYCKTK TITMSDLLKN EFMEVVMKKY GFRDWESVYA AVGHGGLKEG QVINKLQEVY TKKNRKEMTD EKVLETIADV KFDRPAVMKS KGGIVVQGIH DVAVHFSKCC SPVPGDEIVG FVTRGRGVSI HRTDCINVIN LPYEDRERLI DAEWNIPADK QNSGLYTAEI KIYANNRNGV LLDVSRIFTE NKIDVISMTV RTSKQGTATI SVGFEINGVE QLHFIIGKLR SIESVIDIER TTG
|
| |