Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_0475 |
Symbol | |
ID | 5745235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 604922 |
End bp | 606331 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 641291587 |
Product | TPR repeat-containing protein |
Protein accession | YP_001557601 |
Protein GI | 160878633 |
COG category | [S] Function unknown |
COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000269672 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATTGTC CAAAGTGCGG CAATGTGGTC GCAGTTCGAA GAAACAGATG TGAATTTTGC GGGAAAGATT TAACGATCGT AAGAAAAACT GACCGATTAT CCAATACTTA TTATAATCGT GGTTTAGAAA AAGCAAAGGT TAGAGACTTG ACCGGAGCTA TAATCATGTT AAAGAAAAGC TTGGAGATGA ATAAGAGAAA TACCAATGCT AGAAATCTCC TCGGACTTGT GTTCTTTGAG ATGGGAGAAA CAGTAGCCGC ATTAAGTGAA TGGGTTATTA GTAAACATTT CCAGGCAAAA GACAACGATG CCGATGTCTA TATTGGTGCA GTGCAGGCGA ATCCAACGAA ATTGGATTCG ATGAATCAAG CTATAAAAAA GTATAATATT GCATTAGATT CCGCAAAGCA AGGTAGCGAT GATCTGGCAA TTATTCAACT AAAAAAAGTT ATCAATTTAA ATCCGCACTT TATTCGTGCA CTTCAATTAT TAGCATTGAT TTATATGAAG AATAATGAAT TTGAACGTGC AAGAAGGTGC TTAGTTAAAG CAAATAAGAT AGATTTAGCG AATACTACTA CATTACGTTA CTTAAGCGAG TTAAATCAGT TGGTAAGCGG TGGAGAAACT ACCTCTACAC CATATTGGAG TGATGGAGAA GTAAATCCAG ATCCGCTAGG TAAACCATTA TCTCCAATTT CATCTTATAG GGAAGAAAAG CCGAATGTAT GGCTCTTTAT TAATCTTATC TTAGGTGTTG TTATTGGTGT TTCTGTACTC TTTTTCTTAA TTGTTCCAAC TGTAAAGAAA AATGCGCAGA GTGAATATTT GCAAAAACAA CGTGATTTTG ATAGCGATCT TTTAGTATAT CGTACCAAAC TTACTTCTAG TGAAAAAGAA GTGGAAGATT TAAAAGCAAA ACTTGCAGAC AAGCAGAAGG AATTAGATAA TATTGATATT CCAGAATACG ATAAAACAAT GTACGATAGT ATTTTAAGTG CAGTATATCG TTATATGGAA TTAGAATCAA CCAATAGTTT AACACCGGAA AATACGATGG AAGTTGCTGA TTTATTATCG AAAGTGGATC CTTCTAAGAT GGAAAATCAA GATGCCGTTA AATTATTTGA AATGGTAAAG GAAAAGGTAT CTCCGATTGC AGCTAAAGAA GCATATCAGC AAGGGAGAGC GGCATTTGAA AAGAAAGATT ATGAAAAAGC ATTAACATTG TTAACGCAGG CTTATTCTTT TGGTGATCCA GATGACAATA CACTATATTA TTTAGGTAAG ACGGAACAAG AGTTAGGTCA GTACGAGGAA GCAAAAGCGT ATTATAACCA GATGCTAGAA AGTTTTCCAA ATTCTTCGCT GGCTAAGTAT GCAAAGCAAC GTGTAAATGA TTTAGAATAA
|
Protein sequence | MNCPKCGNVV AVRRNRCEFC GKDLTIVRKT DRLSNTYYNR GLEKAKVRDL TGAIIMLKKS LEMNKRNTNA RNLLGLVFFE MGETVAALSE WVISKHFQAK DNDADVYIGA VQANPTKLDS MNQAIKKYNI ALDSAKQGSD DLAIIQLKKV INLNPHFIRA LQLLALIYMK NNEFERARRC LVKANKIDLA NTTTLRYLSE LNQLVSGGET TSTPYWSDGE VNPDPLGKPL SPISSYREEK PNVWLFINLI LGVVIGVSVL FFLIVPTVKK NAQSEYLQKQ RDFDSDLLVY RTKLTSSEKE VEDLKAKLAD KQKELDNIDI PEYDKTMYDS ILSAVYRYME LESTNSLTPE NTMEVADLLS KVDPSKMENQ DAVKLFEMVK EKVSPIAAKE AYQQGRAAFE KKDYEKALTL LTQAYSFGDP DDNTLYYLGK TEQELGQYEE AKAYYNQMLE SFPNSSLAKY AKQRVNDLE
|
| |