Gene Cphy_0312 details

Gene Information

• Locus tag: Cphy_0312
• ID: 5744235
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 389492
• End bp: 391567
• Gene Length: 2076 bp
• Protein Length: 691 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 641291402
• Product: flagellar hook-associated 2 domain-containing protein
• Protein accession: YP_001557438
• Protein GI: 160878470
• COG category: [N] Cell motility
• COG ID: [COG1345] Flagellar capping protein

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAATAC GTTTATCAGG ATTAGCATCT AATATGGATA CGGATTCTAT TATAAAAGAG 
CTTATGAAAG CTCAAGGCTT AAAGAAAACA AAGGTCGAAA ATAAACTTAC AAAATTAGAA 
TGGACTAAAG ATATCTGGAA AGATATGAAC TCTAAGATTT ATAAGTTCTA TACGGGACCA 
TTGTCAAAGC TAAAAACACA AGGTAGCTTC GCAACAAAAA AAGCTACCTC ATCTAATGAG 
AGTAAGGTTA CGGTAAAGGC AGGCACAGGA GCAGCTACTG GTTCTCATAA TGTACAGGTG 
AATAAGCTTG CTAGTGCCCA ATATGTAACA GGTTTTAAAT TAGATAAAGA TAAAAATGAG 
ATTGAGGTAA CCGGAAAAAC TACACTAGAG GATCTTGGAT TTGCAATTGA TGACGGGAGC 
CAATCTACAG ATGGAAGTAA AAATGAAATA GTTATTAAAA TTAATAATTC CGGTAAAACT 
ACAAATCTTT ATGTAACAGC TGAGACCACC TTAAATGATC TTGTGAATGC ATGTGCAAAA 
GCAGGGCTAA ATGCTAGTTA TGATAATACT CAGAAGAGGT TGTTTATTAG TACAAAAGAA 
AGTGGTATTG ATAATTATTT TGAAATGACG ACAGATACGG TAGTTGTTAC AGCTGACAGA 
GAAGAAGTTC GTAATTTATT AGGATATCAT AATGAAGGCA CATCTGGTTC GGCAAGATTC 
CAAATGGATC AAACCATTGA TACTTATACA GAATTATTAG CTATTACTGA CAGAACAAAA 
GAGCAGCAGA AAGCTTTTGA TGAAGCTGAA AAAAAATTAA AAGAGTATAC GAAAAGTAAC 
ACTATAGCTG ATGTACAAAA GGATTATGAT TCATTAACAA GCAATGTCGA GAATATTAAA 
TGTCCAGGTA AAATCGAGGA AGAAATTCGA GATAAATATA AAGACTTAAC TAATCCTCCT 
CCTGAAGAAA CAATATTAGC AGAAATCAAT GAAGCTGTTG ACTCGGAAAA AAGTAAGTAC 
GTTAAATATA AGTTAGATGA ATACGAAAAG ATAAATTCGG GGGAACTGCC TAGTACTGTA 
ACTAATCGAT TTTATGATAA TCAGACTAAA ATGTTAGGTG CATTAAAATC AGCAGGCATT 
AAGGATGCTA CTAATAAAAT TGATAACAAT AACTTAGATG ATATAGGAAT TGGAACTATT 
ACCGTTACAG ATAACGTTTG CTCAACTTCA ATATCAGGTA ATAAGGTATC TATTATAAGT 
TCAGATAATA GTGAAATCAT TTATAATGGA GCTAAATTAG AGGGAACTTC AAATCAGGTG 
ACCGTGAATG GTGTAACTTT TGAACTACAC GGTGTAACTG GTGAAAATGA AAAAGTAACT 
TTGACAGTTG CGAATGATAC CGACGCTGTA TACGATATGG TTCGTAATTT TGTAAAAGGT 
TACAATGAAC TCTTACAGGA GATGAATAAG TTATATAATG CAGACTCTGC AAGAGGTTTT 
AATCCTTTAA CAGAAGATGA AAAAGGATCC ATGACGGACA GCCAGATTGA AAAGTGGGAA 
CAAAAAATCA AAGATTCCTT ACTGCGCCGT GATGATAATT TAAGCGGTTT ACTTTCTTCA 
ATGAGAAGTA ATATGGCAGG AAGCGTCACT GTGAATGGTA AGAATTTATC TTTATCAACG 
TTTGGAATAG TAACGGGGGT TTATACTGAA AAAGGACTTT TGCATATCAA CGGAGATGGT 
GAGGATCCGA TATACGGTGG TTACGAAGAT AAGCTAAAAA AAGCATTGGA AGAGAATCCT 
GAAGATGTAA TGGCGGTACT TAATAAGTTA GCGGACAACC TTTATCAAGA TATGTCAAAT 
AAGATGAAAG GTACTTCATT GAGGAGTGCA CTGACGGTTT ATAATGATAA GGAAATGGCT 
AAACTGGAAA AGAGTTATAA AAAAGATATA GCAACGTTAG AAAAGAAATT AAAAGAGGTA 
GAAAATCGTT ACTATAAGCA GTTCACTGCA ATGGAAACTG CTATGAGTAA ACTAAATTCT 
CAATCTGGCC AACTATCTAG TATGTTAGGC TTGTAA 

 

Protein sequence

MPIRLSGLAS NMDTDSIIKE LMKAQGLKKT KVENKLTKLE WTKDIWKDMN SKIYKFYTGP 
LSKLKTQGSF ATKKATSSNE SKVTVKAGTG AATGSHNVQV NKLASAQYVT GFKLDKDKNE 
IEVTGKTTLE DLGFAIDDGS QSTDGSKNEI VIKINNSGKT TNLYVTAETT LNDLVNACAK 
AGLNASYDNT QKRLFISTKE SGIDNYFEMT TDTVVVTADR EEVRNLLGYH NEGTSGSARF 
QMDQTIDTYT ELLAITDRTK EQQKAFDEAE KKLKEYTKSN TIADVQKDYD SLTSNVENIK 
CPGKIEEEIR DKYKDLTNPP PEETILAEIN EAVDSEKSKY VKYKLDEYEK INSGELPSTV 
TNRFYDNQTK MLGALKSAGI KDATNKIDNN NLDDIGIGTI TVTDNVCSTS ISGNKVSIIS 
SDNSEIIYNG AKLEGTSNQV TVNGVTFELH GVTGENEKVT LTVANDTDAV YDMVRNFVKG 
YNELLQEMNK LYNADSARGF NPLTEDEKGS MTDSQIEKWE QKIKDSLLRR DDNLSGLLSS 
MRSNMAGSVT VNGKNLSLST FGIVTGVYTE KGLLHINGDG EDPIYGGYED KLKKALEENP 
EDVMAVLNKL ADNLYQDMSN KMKGTSLRSA LTVYNDKEMA KLEKSYKKDI ATLEKKLKEV 
ENRYYKQFTA METAMSKLNS QSGQLSSMLG L