Gene Cphy_0240 details

Gene Information

• Locus tag: Cphy_0240
• ID: 5745108
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 297866
• End bp: 299836
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 641291330
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_001557366
• Protein GI: 160878398
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0588744
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATACTTG GGGGGCTATC AAGCCGTAGA GGCTATTACG ATGAACACAA TACTCGAAAT 
AAAAGAAAGA TTCGTTTTTT TGTAATAATG GGAATTGGGA TTCTATCGAT AGTTGCATTT 
TTATTGTCGC TAAAGGGGAT GCTTCATTCA GAGGCTGAAA AGAAGTTATT AGAATATACA 
GGGCTAAGTG CAGATTACAT TAAAAAAAGC GAAGCGGGTA AACAGTTTAT GGAAGAAAAG 
TGGGGATCAG GCATTTTTAC GATCATACCT GGAGCTAAAA ATCCAACTTA CTTTCAAGGA 
AACGCACATA GCTATGTTGT TACAATAAAG GGAGAGGCAA TAGGTGCTTT CTCAGAGTCT 
GGTAAGGATG CATTATCGAT TTATGGAAAC AATGTGATTG ATAGTATAGA AACTTGGGAA 
GATACAAAGG TTTATCAAGA GATCATAGAT AAAAAAGGTT TGGTTATACT CACTAAGCTT 
GCTAATGGGG AGAAGTACTA TATTGCATTC ACATCACCAA GTTGGCTAGA GAATGGGTAC 
ATCATAAGTA TCGTTTCCTA TCAAGAAATT ATTCAAGAAA TTCAATCCGT TTTAAAGATG 
GCAATTGTAA TTGTACTATT TTCACTTCTC GCAATTATTC TGGCTTTTTT CTATAGTATT 
CTACATCGGA ATAGAATCAA GAAAAGGCGT ATGGATATGG GAGCCGTGGA CAAGATTACA 
GGCCTACCTA ACCCACTTCT CCATAAAAAG AAAGTGAAAG AAAAATTAAC AAAAGGAAAT 
GAAAGTTATG CATATGTAAC TTTTTGTATA GATAATTTTG AGCTTATATA TGAATTATCC 
GGTAAGCAAT ACTGCGAAAA ACTATTAAAA CAGATAGCAA GTAAGATTCA AATCATGTTA 
GTTGATGGGG AACTTTTTAC AAGATACCAA AATGATGAAT TTGGAATGCT GCTTGAATAT 
CATGGAGAAC TAAATCTACG AAAGCGTTTG GTTGAGATGT TTAAGTATGC GGGAGACTTA 
CCACAAGAGG ATAATAATTT TTGTTCTATT ACATTCCAGT GCGGTGTATG TGAGATGAAA 
AAGAATATGG ATGTAAAAGA TCTCATTCAA TATGCTAGGC AGGTTAGGAA TAATGAAGTA 
AATGGCTATA CGCCTAATAT TGAATTTTAT AATAAGAAAG AAGAAAAGGG CGAGCAGCCT 
AAGATAGAAG AGATCACAAA TGCTCTAAGT CATAATGAGT TTCTGGTATA TCTACAACCA 
ATTCTTCAAT TGGATACAAA AAGGATAGCT GGTGCAGAAG CTTTAGTACG ATGGAATCAT 
AAGATGGATG GAATATTACC TCCTAATGTA TTTCTTCCTA TGTTAGAAGA GGATGGTTCC 
ATTGTTAAAC TTGACATGTA TGTGTTAGAG GAGGTATGTG AGTATCTAAG AGACTGGATG 
GATAAGGGGA AAAGAGCTGT GCCAATATCA GTGAATCTAT CTGGAAAGCA CCTTGAGAGA 
CCTGAATTTA TTACAGAGCT TGTAGAGATT GTCGACTATT ATCAGATACC ACATGAACTA 
TTGGAGTTTG AATTTTCGGA AGTCAATCTT TATGGAGCTA TGGATATGAT GAAGAACGCA 
ATACAAAAGT TAAGAGAATT AGGCTTTCTT ATTGCGATTG ATCAATTTGG TGCTGGATTT 
TCCTCTTTGC AATTATTAAA AGAATTGCCG ATTCATGTAT TAAAGATTGA TAAAAAACTT 
ATTATGAATT TAGAAGACTC GGAATTTTCA AATCAAGAGA AAACAATTGT TATGCATATC 
CTCTCCTTCG CAAAAGCGAG AAATCTTACC GTGATTGCGG AAGGAGTGGA AACGAAAGAA 
CAACAAGATT TACTTATCGA TCAACAGTGT GATATGATGC AGGGATTTTA TTATCAAAAA 
CCTATGCCAT CGGAGGAGTT CGAACGATTG TTAGATGCCT CCGGAGCGTA G 

 

Protein sequence

MILGGLSSRR GYYDEHNTRN KRKIRFFVIM GIGILSIVAF LLSLKGMLHS EAEKKLLEYT 
GLSADYIKKS EAGKQFMEEK WGSGIFTIIP GAKNPTYFQG NAHSYVVTIK GEAIGAFSES 
GKDALSIYGN NVIDSIETWE DTKVYQEIID KKGLVILTKL ANGEKYYIAF TSPSWLENGY 
IISIVSYQEI IQEIQSVLKM AIVIVLFSLL AIILAFFYSI LHRNRIKKRR MDMGAVDKIT 
GLPNPLLHKK KVKEKLTKGN ESYAYVTFCI DNFELIYELS GKQYCEKLLK QIASKIQIML 
VDGELFTRYQ NDEFGMLLEY HGELNLRKRL VEMFKYAGDL PQEDNNFCSI TFQCGVCEMK 
KNMDVKDLIQ YARQVRNNEV NGYTPNIEFY NKKEEKGEQP KIEEITNALS HNEFLVYLQP 
ILQLDTKRIA GAEALVRWNH KMDGILPPNV FLPMLEEDGS IVKLDMYVLE EVCEYLRDWM 
DKGKRAVPIS VNLSGKHLER PEFITELVEI VDYYQIPHEL LEFEFSEVNL YGAMDMMKNA 
IQKLRELGFL IAIDQFGAGF SSLQLLKELP IHVLKIDKKL IMNLEDSEFS NQEKTIVMHI 
LSFAKARNLT VIAEGVETKE QQDLLIDQQC DMMQGFYYQK PMPSEEFERL LDASGA