Gene Cphy_0193 details

Gene Information

• Locus tag: Cphy_0193
• ID: 5745061
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: -
• Start bp: 240094
• End bp: 242037
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 641291283
• Product: ABC transporter related
• Protein accession: YP_001557319
• Protein GI: 160878351
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.138563
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTTAA TAAGAAATGT ATCCAAGCAA TTCGGGGATG AATATGCCCT TAGAAATATT 
TCTATGACCA TTGGCAAGGG GCTGAATTTT ATTATTGGTT CCTCTGGCAG CGGTAAAACT 
ACGCTGCTAA AAATCATCAG TGGTATGGAA CAAAAATTTG ACGGTGAGGT TTTTTATTGT 
GGGCAAGATG TAAAAGCACT CACCGAGCAG GAAAAAAGCT ATTACTATAA TAATATATTC 
GGCTTTGTGT GGCAGGATTT TAACCTGTTA GATGATTTGA CAGTTTTGGA AAACATCATG 
CTTCCACAAT TTTTAAAACA TGGTCAAGAT AAAAAAGCAA TTATGAAGGT GTTACGCGAA 
CTAAAAATTA GTGAGCTTGA CAATCAAAAG GTAGGTAAGT TATCTGGCGG TCAAAAGCAG 
CGTGTGGCAA TAGCTAGAGA GCTGATGAAA AATCCACAAG TCATCATTGC AGATGAGCCA 
ACCAGTGCTT TGGATGAAAA ATCCTCAAAA ACTACAATGG ATATTTTGCG TGACATTGCC 
AAAAACAGAA CTGTGATTGT GGTTACTCAC GATACCTCGC TGATTGACCA GAGTGCCAAG 
GTTTATGAGC TTGATAAGGG TGAATTGACC GCTGCTACCG AGGAGGTTTC CATAAAGGAA 
GAAAAAGCTG ATACATTAAA ACCTCACAAG CTTTCTTTTG CGAGTGCCTG TAAACTGTCT 
TTAAGTAACA TCAAAAGTAA GTGGAATCGT ACAATTACTA CCGCGCTTTC ACTGGTGGTT 
GCTGCAACCC TTCTGTTAGT CACAGTCAGT GGTGCGATTA CAGACAGTAG TCAATCTGCC 
TTCGACAAAT TGTTTGAAAC CTATGGTGAA AGCATTTTGG ATATCAGCAT CGTGGGGAGC 
TTTATGAGTG CAGGTGGAAC AGATGGCTCC CAAAAGGATG AGCCAAACGC CAATGTAGAC 
CAAAATATTG ATGGGCTGTA TGATAAATAT CTGAATGACA AGCGAGTGTC CCACATCGTA 
TTCACGCAAC ACTACAACGA CATTAAGGTA TCAGCAGATG GCAAAGAGTA CAGCATCGAC 
ACAGGCAGTT CCGTCCCTAC TGTCAACAAG CTAATTGCAG GCAAAATGCC TATGGGAGAA 
GATAACGAAA TTGTTGTCCC AAAAAGCTTT ATTGAAAAGC TAGGTGTTTC AGCGGAAGAA 
GCACTAGGTA AAACCATTGA CTTTAAAGGA AACATCTATA ACTGGGACAG TGGTGAGCCT 
GTTTCAATGC CGGTGTCTAC CACAGCGAAC ATCGTTGGTG TGGTAGACAC CACAGTCAAA 
TATGAATACG GTGGTCAGTT GATGGAATAT TCCGTGGATG ACGCCTTCTT TTTTAGTAGA 
TCTGCACTAA ATGAGATGCG CACACAAGCG GACATAAAAA ACGGCGAAGG GAATTTTACA 
ATCCGCACCA AGACACCTGC TGATCTAATT GCTATTAAGG ATGAACTCAA TGCAGAAGGT 
ATCGTCCCAC TAGGGCGTTT TGAACTGGTG GAGGATATGG TACGTTTAAA TGACCAGACT 
ACCGAACAGT CCGGTTCTGC TATCCTCGTT ATCGGTATCT TGGCAGCAGT AATCATTCTT 
TCGGTATCCT TAATGACCGC TCTAACACGT AGGAGAGAAT ATGCGATTTT TAAAGTAAGT 
GGATATGCAA ACCAGCACCT CTTACTGATG ACGGCTTCGG AATTTATGAT TTTAGCAGCA 
GCATCTGGCA TTCTATTCCT ATGCATTTCT CCTCTTATAA ACTTAGCAAC CACTGCACTT 
TGGAGTGTCA ATATATTAAA CGGAAATCTA CTTTTTGCTG GAGTGTTACT TGTCCTTGTA 
ATGGGCATCC TTGCCTGTAC AACCACAACC ATTGCAGGTA TTATGACTAA GGCGTCTGCC 
TCACTAAAGA CAGGAGATCG TTAA 

 

Protein sequence

MFLIRNVSKQ FGDEYALRNI SMTIGKGLNF IIGSSGSGKT TLLKIISGME QKFDGEVFYC 
GQDVKALTEQ EKSYYYNNIF GFVWQDFNLL DDLTVLENIM LPQFLKHGQD KKAIMKVLRE 
LKISELDNQK VGKLSGGQKQ RVAIARELMK NPQVIIADEP TSALDEKSSK TTMDILRDIA 
KNRTVIVVTH DTSLIDQSAK VYELDKGELT AATEEVSIKE EKADTLKPHK LSFASACKLS 
LSNIKSKWNR TITTALSLVV AATLLLVTVS GAITDSSQSA FDKLFETYGE SILDISIVGS 
FMSAGGTDGS QKDEPNANVD QNIDGLYDKY LNDKRVSHIV FTQHYNDIKV SADGKEYSID 
TGSSVPTVNK LIAGKMPMGE DNEIVVPKSF IEKLGVSAEE ALGKTIDFKG NIYNWDSGEP 
VSMPVSTTAN IVGVVDTTVK YEYGGQLMEY SVDDAFFFSR SALNEMRTQA DIKNGEGNFT 
IRTKTPADLI AIKDELNAEG IVPLGRFELV EDMVRLNDQT TEQSGSAILV IGILAAVIIL 
SVSLMTALTR RREYAIFKVS GYANQHLLLM TASEFMILAA ASGILFLCIS PLINLATTAL 
WSVNILNGNL LFAGVLLVLV MGILACTTTT IAGIMTKASA SLKTGDR