| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0171 |
|---|
| Symbol | |
|---|
| ID | 5745039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 214786 |
|---|
| End bp | 216945 |
|---|
| Gene Length | 2160 bp |
|---|
| Protein Length | 719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 641291261 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001557297 |
|---|
| Protein GI | 160878329 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGTC AGCAATTAAA TATCCACCAA ATATTAGATA TATTTTATAA ATCCACTGGG
ATTGAAGCCA TTTTCTTCGA TACCGAGCTT AATCTCATTA TGCACCGCGC TTCTGAAAAA
TTAACCACAT ATTATCCTTT TCTTGGTATT AGTGAGGTTA TGGCTTATTT AGCAGATCGT
TTTTCGGAGC AACCAGGTAC TAACTCTGCA TTTTATACCT ATGTGTTACC AAACAATTTC
CTCTGCAATA TTGCTTTTCT TACTCAAGAA AATAGCTATA TAGGGGCTTT TCTAACAGAG
CCAGTATTAT TAAAAAAACT AAACAAAAGT GACCTTGATA AGGTTTTGAA TCGATCCGAA
CTTTCCAATC AAGATAAAAA AACATTTGAA AATATCCTGT TTAAAGTGCC TGTAATACCA
TACATAAATA TATTACCAAT TGGCACTGTT CTTTATCAAC TTTCCAAGAC ATATTCCGAA
AACATGCCAC AACAAATCAT AATTGAGCAT AAAGCAAGAA CGTCTGCATT AAACCATAAC
TCAAATAAAA AACAAAACAT TGTCATAACA TCTTCTGTAA AATACACTCC ATTTTCTACC
TATCTACAGA TTATAGAAAT TATTAAAAGT GGTGATGTGG TAAGGTTACG AAGTGCTATG
AATGAAATTA GTGTTGGCGA AATACTGATG AATCAGTCAA ACGACTCAGA TATTATGCGT
TCTATAAAGA ATAGCTTTAT CAAAACTTGT TCGATGGGCT GTTACGCTGC TATAGACGCA
AATGCCTCAT ATGAAAAGGT TATGGATATT TCAGATGACT ATATTTCTAA GATTGAGACT
AATGATAATA TCAATGATAT AATAGCTCTC TTAAAAGAAG TAATGATTTC ATATACCAAA
GCGGTGGCGA TGAATCGAAA TACCATTTAC TCTAAACCTA TCCGGCAGGT AATGGAGTAT
ATTCAGTGCC ATTATGACGA GAAAATTACC TTGGAAAAAC TATCAGAGTA TACCGAACTT
AGTACTTTTT ACTTATCCAA TTTAATTAAG AAAGAAACCG ACCTTAGTCT CCCTGATATT
GTAAATAAAG TTCGAATTGA AAAGAGTAAA CCCTTACTTT TAAACATGAA TATCAGTATT
CTTGATGTGG CTCAAAGGGT AGGTTTCAAC TATCAAAATC ATTTTGCATC TATATTTAAA
AAATATACCG ATCTTACACC CACGGAATAC AGAAAAACCA TGAGTTATAA ACAAAACACA
AATTCAAGCG AGTTTGAAAA TAGCCTAATA AATGTAGTTG AGCAGATAAA TAATAAAATA
TCAATGTTCT CACATTTGTT TGATGCAGCG CGAATTGTCG ACCCGATACG TCATAAATCC
ATGTTTATTA AAACAAGTGA TACGGTATTC CCTGAAGAAA CCTGCTATCA CTTTTGGTAT
AGAAGCGAAT CTTGTCAAAA CTGCATTTCC ATGAAGTCCT ATTTGCATAA TGATACATTT
TTTAAAATTG AACATCGAGA TAACGATACC TTTTTAATGA TAGCAACGCC AAAGACAGTT
GGGAAAGACA CCTATATTGT AGAAATCATG AAAGATGTAA CAAAACAATT GTCAATCAAC
ATAAAAGCAG AAAGTCCAGA AAATCCTACT CTTGTAATTG ATAAAAAGTT TCGGGAGGAA
AAGGATGAAC TCACTGGGCT CTATAATAGA AGATACATAA GTGATCAATT ACCAGTTTCC
ATGAGACATA GCATTCTTGA GAGAAAATCG TTGTTCATTG TATTGTTCGT TATTGATGAG
CTGCAATCTA TAGATAACTA TAGTGATTAT GAATCTTACG ATTCTATATT AAAAGAATTC
ACCCGTCTTA TTACGTCTTC TTTAGTAAAC AAAAAAGATT GGGCTGGTCG TTATGCTGGT
AGTTTATTTT TATTAGTTTT ATATGATACC GATTACGAGA GCGCATGTAA TACAGCAGAT
AATATAAAGA ATAATTTTAA TCAGACTTCT TTTCAAATCA ATGGAACTGC TGTTAAGTTG
ACAGCAAATT ATGGTGTTAA GTTACTCAAT GAGGATATCT CAGATGTAGA GACATTAATA
TTACATGCAT TTATGAATCT GATTACCAAT AAACTTCGAG TACAGAATAT CATTGATTAA
|
|---|
| Protein sequence | MKRQQLNIHQ ILDIFYKSTG IEAIFFDTEL NLIMHRASEK LTTYYPFLGI SEVMAYLADR
FSEQPGTNSA FYTYVLPNNF LCNIAFLTQE NSYIGAFLTE PVLLKKLNKS DLDKVLNRSE
LSNQDKKTFE NILFKVPVIP YINILPIGTV LYQLSKTYSE NMPQQIIIEH KARTSALNHN
SNKKQNIVIT SSVKYTPFST YLQIIEIIKS GDVVRLRSAM NEISVGEILM NQSNDSDIMR
SIKNSFIKTC SMGCYAAIDA NASYEKVMDI SDDYISKIET NDNINDIIAL LKEVMISYTK
AVAMNRNTIY SKPIRQVMEY IQCHYDEKIT LEKLSEYTEL STFYLSNLIK KETDLSLPDI
VNKVRIEKSK PLLLNMNISI LDVAQRVGFN YQNHFASIFK KYTDLTPTEY RKTMSYKQNT
NSSEFENSLI NVVEQINNKI SMFSHLFDAA RIVDPIRHKS MFIKTSDTVF PEETCYHFWY
RSESCQNCIS MKSYLHNDTF FKIEHRDNDT FLMIATPKTV GKDTYIVEIM KDVTKQLSIN
IKAESPENPT LVIDKKFREE KDELTGLYNR RYISDQLPVS MRHSILERKS LFIVLFVIDE
LQSIDNYSDY ESYDSILKEF TRLITSSLVN KKDWAGRYAG SLFLLVLYDT DYESACNTAD
NIKNNFNQTS FQINGTAVKL TANYGVKLLN EDISDVETLI LHAFMNLITN KLRVQNIID
|
|---|
| |