| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0112 |
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| Symbol | |
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| ID | 5744262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 149444 |
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| End bp | 152983 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641291200 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001557240 |
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| Protein GI | 160878272 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAT TTACTGCACC CTTGCAGGAA TATCGGGAGT TTCAAGTAAT TGAGCAAAGC
ATTCAAAAAA ATCAATTTCC ACTCTTAATA ACAGGATGTA TCGATTCGCA GAAATGTCAC
CTGATACATG CGCTTTCTGA GGGGATTGTA TGCAAGCTTG TGATTACTTA TAATGATATA
AAAGCGAAAG AAATCTATGA AGATTTAAAG CTTTATGATC GCAATGTGTA TTTATATCCC
GCTAAGGATA TTATTTTTTA CAGTGCGGAC ATCCATGGGA ATGCCATAGT CAGAGAACGT
ATGAGAATTC TGAAGAATCT TCTAGAACGA AAACCAATGA CGGTAGTGGC AACAATTGAT
GGAGGTATGG ATAAGTTATT ACCACTTGAT TATCTTTCGG ATAAAATTAT ATGTATTAAA
GAAGATTCCA CAATTGAAAT TGAATGCTTA AGTGAAAAGC TAATTCACCT TGGCTATGAA
CGTCAGGGAC AAGTGGAAAA TCCGGGTGAA TTTGCCATCC GTGGAGGAAT TATAGATATC
TATCCATTGA CTGAGGAAGC TCCTTACCGT ATCGAGTTAT GGGGGGACGA GGTAGACTCT
ATTCGTACCT TTGATGTTGG TAGCCAACGC TCTATTGAAA GAGTTAGTAC AGCAGTTATC
TATCCAGCTT CTGAAATTAT TTTAGAGCCA GAGGCACTTA AAAATGGACT TCATAAGTTA
AATATAGAAC AAAAAGAGTA TGTTGGTAAG TTACGAGGAG AGCTAAAAAC CGAGGAAGCT
GCGAGGATTC ATCAGATTGT AGAGGAGTTT AAGGAAAATC TTGAATGCTT ACAAGGTTCT
TTAAATCTTG ATAGTTATAT TCGTTTCTTT TATGATAAAA CATGTTCTTT CTTTGATTAC
TTTGCCAATG ATAGCTCTAT TATATTTGCG GATGAACCAA ACCGTCTGGC AGAAAAAGGC
GAAGCTGTAT TTACCGAGTT TTCAGAGAGT ATGGTAGGAC GTATTGAAAA AGGATATATC
TTACCAAGCC AAATGGATGT TATCTATGAC TATAAGGAAT TGTTAGCAAA CCTAAGTCGA
AGAAACAGTG TATTAATAAG TACGATGGAC CATAAGGTAA TGCAACTTGC AGCAAAAAAG
AAAGTGGATA TTACCGTTAA AAGTGTGAAT CCGTATAATA ATAACTTTGA AATTCTAATA
AAAGATTTAC AAAACTGGAA GAGAAACGGT TATCGTGTGA TTTTACTCTC TGGCTCCAGA
ACCAGAGCAG CGAGACTTGC ACAGGATTTA AGAGATAATG AATTGCCTGC TATCTATAGT
GAGGATGTAG ATAGAATACC GGTAAAGGGC GAAATTGTGG TAATGCACGG CAGTGTTCAC
CGTGGATTTG AGTATCCGTT AATTAAGCTT GTTATTATCT CAGAAAGCGA TATCTTTGGT
GCTGAAAAAA AGAAGAAAAA GAAAAAGCCT AGTTATGAAG GTAAGCAGAT ACAAAGCTTT
ACCGATTTAA ATATAGGTGA TTATGTCGTA CACGAAAATC ATGGGTTAGG AATTTATCGT
GGTATCGAAA AAATCGAAGT GGATAAAGTA AGCAAAGATT ATATTAAATT AGAGTATGGT
GGTGGCGGAG TACTCTACAT CCTAGCGACT GGTTTAGATG TTATTCAAAA GTATGCCGGT
GCAGATGCGA GAAAGCCAAA ACTGAATAAA TTAAACTCAG TAGAGTGGAA GAATACAAAA
GCCAAAGTAA AGGGAGCAGT AAAAGAAATA GCGAAAGAAC TAGTAGAGCT CTATGCGACC
AGGCAGGCGA AGGCAGGTCA TTCTTTTTGT GAGGATACGG TTTGGCAAAG GGAATTCGAA
GAGATGTTCC CATATGAAGA AACAGATGAT CAGCTAAGGG CGATTGATGA CACCAAACGG
GATATGGAAA GTAAAAAAAT TATGGATCGT TTGATTTGTG GTGACGTTGG CTATGGAAAG
ACAGAAATAG CAATTCGTGC AGCATTTAAA GCAATTTCGG ATGGAAAACA AGTTGTATTC
TTAGTACCAA CAACGATATT AGCGCAGCAG CATTATAATA CATTTAGCCA GAGAATGATG
AATTTCCCAA TTAGTGTTGA TATGTTATGT CGTTTTAAAA CTCCAGCGCA GCAGAAAAAA
ACATTAGAGA ATTTAAAAAA GGGACAACTT GATATCTTGA TTGGAACCCA TAGAGTTTTA
TCAAAAGATA TTCAGTTTAA AAATCTAGGA CTTTTGATTA TTGATGAGGA GCAGCGTTTT
GGTGTTACTC ATAAAGAAAA AATCAAACAG ATGAAAGGCG ATATCGATGT TCTCACTCTT
ACCGCCACTC CGATTCCAAG AACCCTTCAT ATGAGCTTAG TTGGAATCAG AGATATGAGC
GTTTTGGAAG AGCCACCGGT TGACCGTTTG CCGATACAGA CCTTTGTCTT AGAGCATAAT
GATGAAATTA TAAGAGAGGC AATCAACCGA GAATTAGCAA GAGGCGGTCA AGTTTATTAT
GTACACAACC GTGTTAATGG ATTAGATGAG ATAACAAATA CAATAGCAAG GCTGGTTCCA
GATGCCAATG TAGCGTTTGC TCACGGGCAG ATGCATGAAC ATCAGCTGGA AAAGATTATG
TTTGAGTTTA TAAATGGTGA AATCGATGTT TTGGTCTCAA CCACAATTAT TGAGACCGGT
CTTGATATAT CCAATGTAAA TACCATGATT ATTGATAATG CGGATCAATT AGGGTTATCC
CAATTATATC AGTTACGTGG ACGTGTTGGA CGTTCCAACC GTACCTCGTT TGCTTTCCTT
ATGTATAAAA GAGATAAGTT GCTAAAGGAA GTCGCAGAGA AGCGTTTGCA GGCAATTAAA
GAATTCACAG AGCTCGGATC AGGATTTAAG ATTGCGATGC GTGACCTTGA AATTCGTGGA
GCTGGTAATC TTTTAGGTGC TCAACAAAGT GGTCATATGG AAGCTGTCGG ATATGATTTA
TATTGTAAGA TGCTAAACGA TGCTGTGAAG GGATTAAAGG GAGAGATTAG TGATGAGGAT
ACCTTTGATA CCAGCATCGA TATGGATATG GATGCCTTTA TTCCGTCTAC TTATATTAAA
AATGAAATGC AAAAACTTGA TATGTATAAG CGGATAGCTG GAATAGAGAA TGAAGAAGAG
TTTATGGATA TGCAAGAAGA GATGCTGGAT CGTTTTGGAG ACATTCCAAC CTCTGTAAAT
AATCTGTTAA ACATCGCATT ACTTAAGTCA ATGGCGCATC AGGTGTATGT TAGTAATTTG
GTCCAAAAAG GGACTGAGGT TAAGCTGTCG ATGTACCCGA AAGCTAAGAT AAAAGTTGAG
ATGATACCAG AACTTCTTCT AAAAGTAGGC AACAATCTAA AGATGATTCC TGGTGCCACA
CCGTTTTTTA CTTATCATAT GGCTAACGTG ATTAAAAATC CTAAAGTTGG AACGATAGAC
ACATTAGCAG TTTTTGAGAG TGTAAAAAAT CTATTATTAG AGTTTCAAAT CCTTGTTTAA
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| Protein sequence | MKTFTAPLQE YREFQVIEQS IQKNQFPLLI TGCIDSQKCH LIHALSEGIV CKLVITYNDI
KAKEIYEDLK LYDRNVYLYP AKDIIFYSAD IHGNAIVRER MRILKNLLER KPMTVVATID
GGMDKLLPLD YLSDKIICIK EDSTIEIECL SEKLIHLGYE RQGQVENPGE FAIRGGIIDI
YPLTEEAPYR IELWGDEVDS IRTFDVGSQR SIERVSTAVI YPASEIILEP EALKNGLHKL
NIEQKEYVGK LRGELKTEEA ARIHQIVEEF KENLECLQGS LNLDSYIRFF YDKTCSFFDY
FANDSSIIFA DEPNRLAEKG EAVFTEFSES MVGRIEKGYI LPSQMDVIYD YKELLANLSR
RNSVLISTMD HKVMQLAAKK KVDITVKSVN PYNNNFEILI KDLQNWKRNG YRVILLSGSR
TRAARLAQDL RDNELPAIYS EDVDRIPVKG EIVVMHGSVH RGFEYPLIKL VIISESDIFG
AEKKKKKKKP SYEGKQIQSF TDLNIGDYVV HENHGLGIYR GIEKIEVDKV SKDYIKLEYG
GGGVLYILAT GLDVIQKYAG ADARKPKLNK LNSVEWKNTK AKVKGAVKEI AKELVELYAT
RQAKAGHSFC EDTVWQREFE EMFPYEETDD QLRAIDDTKR DMESKKIMDR LICGDVGYGK
TEIAIRAAFK AISDGKQVVF LVPTTILAQQ HYNTFSQRMM NFPISVDMLC RFKTPAQQKK
TLENLKKGQL DILIGTHRVL SKDIQFKNLG LLIIDEEQRF GVTHKEKIKQ MKGDIDVLTL
TATPIPRTLH MSLVGIRDMS VLEEPPVDRL PIQTFVLEHN DEIIREAINR ELARGGQVYY
VHNRVNGLDE ITNTIARLVP DANVAFAHGQ MHEHQLEKIM FEFINGEIDV LVSTTIIETG
LDISNVNTMI IDNADQLGLS QLYQLRGRVG RSNRTSFAFL MYKRDKLLKE VAEKRLQAIK
EFTELGSGFK IAMRDLEIRG AGNLLGAQQS GHMEAVGYDL YCKMLNDAVK GLKGEISDED
TFDTSIDMDM DAFIPSTYIK NEMQKLDMYK RIAGIENEEE FMDMQEEMLD RFGDIPTSVN
NLLNIALLKS MAHQVYVSNL VQKGTEVKLS MYPKAKIKVE MIPELLLKVG NNLKMIPGAT
PFFTYHMANV IKNPKVGTID TLAVFESVKN LLLEFQILV
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