| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0042 |
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| Symbol | |
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| ID | 5744962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 59873 |
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| End bp | 61063 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641291124 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001557171 |
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| Protein GI | 160878203 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0740017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGAATTAT ATAATAAAAT ATTAGAATAT TTTTTAACCA AGGGATGTCA GCGTTTACAG
GTAAATGCAT CTGGTATGGA TGTATTCTAT CAAACAAATC TAGAGCAATG CACCGTATAT
TGGCTGATTG AAATTTATAA TGGAACAGAA ATCTTAAATG ATCAGTATCA AAACATTAAA
CGTCAAATCG AAACAGCCTT TTTTAGCAAG GGTTATCAAA AGGTTTTGGT ATACGCAATT
CTTTGCACAA AGAATACAGA GGAAGCTTTA AAGATTTGTA GGATGAGCGA AAGCGCTTGT
ATCGTTGATA TGCTTCAGTA TCGTCTGATG CTTTTTGAGG GTCAGGCTAG GGATGAGAAT
GGAGTATTTC GTGGGTTAGA GCAACTAATT TCAGAATATG GAAGATTATA TTTTGCTACC
CATGGAGGGC AGGATTATTC AAGCCAAAAT ACTGATAGTC AAGGAAACAA TGAAAACTCT
TGGGGTGGTT ATGGCAGTGA TTACGAAAAT CAAAGAAGTC AAGGTACCCA TCAACAAGGC
TCCTATCAGC AAGGGTACGG TGATTATCAG TCAGGAAAAG CATATCAGAG AAAGAACGGA
TTTTTCTCTG GTGTTGGCAT AGTTACACTA GTTCTAATTG CACTAAACGC AGTGGTATTT
TTCTATACTG ACCTGTCCGG TAATTATAAT AAGATTATTT CAGAAGGTTG CATTTTCTGG
CCGCTTATAA AATTTAATAA CGAATACTAT CGACTTTTAA CCTATCAATT TTTACATGCG
AATATAAGTC ATCTAGTAAA TAACATGCTT ATTCTGGCAA TTATGGGGTC CACATTGGAG
CGACATGTCG GTAAATTTAA GTATCTATTG ATTTACTTTC TGTCTGGAAT TGTTGCAGGG
ATTGCCTCTA TGAGTTATAA TATGTGGAAA GGTTTATTTA GCAATAGTAT TGGCGCGTCA
GGAGCAGTAT TTGGCGTTAT AGGAGCAATC GCATTGATTG TAGTAGTGAA CAAAGGAAGA
CTAGAGACGA TTGGTACCAG GCAGATTATC ATCTTTATAG CACTTAGTTT GTATGGAGGA
TTTACAAGTC AGGGTGTTGA TAATGCTGCT CATGTGGGAG GTCTGCTTGC GGGCTTCTTT
ATTGCTATGC TTGTTTACCG AAAGAAGAGG GGGCGCATAC GTGAAGATTA A
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| Protein sequence | MELYNKILEY FLTKGCQRLQ VNASGMDVFY QTNLEQCTVY WLIEIYNGTE ILNDQYQNIK
RQIETAFFSK GYQKVLVYAI LCTKNTEEAL KICRMSESAC IVDMLQYRLM LFEGQARDEN
GVFRGLEQLI SEYGRLYFAT HGGQDYSSQN TDSQGNNENS WGGYGSDYEN QRSQGTHQQG
SYQQGYGDYQ SGKAYQRKNG FFSGVGIVTL VLIALNAVVF FYTDLSGNYN KIISEGCIFW
PLIKFNNEYY RLLTYQFLHA NISHLVNNML ILAIMGSTLE RHVGKFKYLL IYFLSGIVAG
IASMSYNMWK GLFSNSIGAS GAVFGVIGAI ALIVVVNKGR LETIGTRQII IFIALSLYGG
FTSQGVDNAA HVGGLLAGFF IAMLVYRKKR GRIRED
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