| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0014 |
|---|
| Symbol | |
|---|
| ID | 5744934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 24186 |
|---|
| End bp | 26168 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641291097 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001557144 |
|---|
| Protein GI | 160878176 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACA TTGACACAAT GTCCATTAAC GCGATCCGTG TATTAGCTGC GGATGCCGTA
CAGAAAGCGA AATCAGGTCA TCCGGGGCTA CCACTTGGAT GTGCTGCAAT TGCTTATGAT
ATTTGGGCAA ATGAAATGAA GCATAATCCA GCAAACCCTG ATTGGGCGAA TCGAGATCGT
TTCATATTAT CTGGTGGACA TGGATCTACG TTATTGTATT CCTTGTTACA TTTATTTGGA
TATGGTTTAA CCAAAGAAGA TATGATGCAA TTTCGTCAAT TAGATTCCCT TACACCAGGT
CATCCAGAGT ATCGTCATAC AAAGGGTGTA GAAGCTACAA CAGGACCACT TGGTGCAGGT
ATGGCAATGG CTGTTGGTAT GGCAATGTCT GAAGAGCATT TAGCTGCAAA ATTTAATAAA
GAAAATTATC CAGTAGTAGA CCATTATACT TATGTACTCG GTGGAGACGG CTGTATGATG
GAAGGTATCT CTTATGAGGC ATTTTCTTTA GCTGGTACAT TAGGACTTTC CAAGTTAATT
GTTTTCTATG ATTCTAATAA GATTTCCATC GAAGGCGATA CTGATATTGC ATTTACTGAG
GATGTTTTAA AACGTTTTGA GGCATTCCAC TTCCAGACTA TCGTAGTGGA AGATGGTAAT
AACATTGAAG AAATCTCAAA TGCGGTAAAA GCTGCTAAAG CGGATACAAA TAGACCAAGC
TTGATTTTAT GTAAAACACA GATTGGTTAT GGCTGTCCTG CAAAACAGGG TAAGGCAAGT
GCACATGGAG AACCTCTTGG AGATGACAAT GTAGTAGCAT TAAAAGAAAA TATCGGCTGG
CCTTCCACAG AACCTTTCTT TGTACCAGAA GAAGTATATG CTCACTACAA CGAAATTGCA
GCTAAGAAGG CAGAGGATGA AACTGCATGG AATAAGATGT TTGCAGAATA TTGTTCTGCT
TATCCAGAAA TGAAGGAAGC ATGGGAGAAG GAATTCGACC TTGATGTTGC AAAAGAATTA
ATTGATAATG AAGAGTTCTG GTCATTTGAG GACAAGCCAG AAGCAACTAG AAACTTATCT
GGTGTTATTT TAAATAAATT AAAGAACTAT GTACCAAGTT TAATTGGTGG TGCAGCAGAC
TTAGCTCCTT CTACAAAGAC TTATTTAAAT AATGAAGGTG ATTTCTCCAA AGACAATAGA
CTTGGAAGAA ACCTTCACTT TGGTGTAAGA GAGCTTGCTA TGGCGGCAAT TGGAAATGGT
ATGGTATTAC ATGGTCTACG TGCTTATGTA TCTACCTTCT TTGTATTTAG TGACTATATG
AAACCAATGG CAAGATTATC ATCACTTATG AGAATACCGA CAACTTTTGT TTGGACACAT
GATAGTATCG GTGTTGGTGA AGATGGTCCA ACTCATGAAC CAATTGAGCA GCTTGCAATG
TATCGTGCAA TGCCGAACTT CCATATATTC CGTCCAGCAG ATGCTACGGA AACAATTGCT
GCTTGGTATA GTGCAGTAAC TTCTAAGGAA ACTCCAACAG CTCTTGTATT AACAAGACAG
AACCTTCCAC AGTTAGCAGG TTCATCAAAA GAAGCATTAA AGGGAGCTTA TGTATTAGAA
GATTCTAATA AGGAGACTCC AGATGCAATT ATTATTGCAA CTGGTTCTGA AGTTGAACTT
GCTGTTGCAG CAAAGGCGGA GTTATTAAAA GAAGGCGTTG ATGTACGTGT AGTTAGTATG
CCATGTATGG ACATCTTTGA AGAGCAAAGC AAGGAATATA AAGAAAGCAT TCTACCTAGT
GCAGTTCGTA AGAGAGTAGC AGTTGAAGCA CTCATCGGAT ATGGCTGGGA GAAATATGTT
GGTTTAGATG GCACAATCGT TTCTATGAAC GGATTTGGTG CATCTGCTCC AGCGGGGACA
TTATTCAAGA AATTCGGATT TACTACAGAG AATGTAGTAG CATCGGTTAA ATCAATTCTA
TAA
|
|---|
| Protein sequence | MNNIDTMSIN AIRVLAADAV QKAKSGHPGL PLGCAAIAYD IWANEMKHNP ANPDWANRDR
FILSGGHGST LLYSLLHLFG YGLTKEDMMQ FRQLDSLTPG HPEYRHTKGV EATTGPLGAG
MAMAVGMAMS EEHLAAKFNK ENYPVVDHYT YVLGGDGCMM EGISYEAFSL AGTLGLSKLI
VFYDSNKISI EGDTDIAFTE DVLKRFEAFH FQTIVVEDGN NIEEISNAVK AAKADTNRPS
LILCKTQIGY GCPAKQGKAS AHGEPLGDDN VVALKENIGW PSTEPFFVPE EVYAHYNEIA
AKKAEDETAW NKMFAEYCSA YPEMKEAWEK EFDLDVAKEL IDNEEFWSFE DKPEATRNLS
GVILNKLKNY VPSLIGGAAD LAPSTKTYLN NEGDFSKDNR LGRNLHFGVR ELAMAAIGNG
MVLHGLRAYV STFFVFSDYM KPMARLSSLM RIPTTFVWTH DSIGVGEDGP THEPIEQLAM
YRAMPNFHIF RPADATETIA AWYSAVTSKE TPTALVLTRQ NLPQLAGSSK EALKGAYVLE
DSNKETPDAI IIATGSEVEL AVAAKAELLK EGVDVRVVSM PCMDIFEEQS KEYKESILPS
AVRKRVAVEA LIGYGWEKYV GLDGTIVSMN GFGASAPAGT LFKKFGFTTE NVVASVKSIL
|
|---|
| |