| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4627 |
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| Symbol | |
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| ID | 5756462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009999 |
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| Strand | - |
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| Start bp | 38832 |
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| End bp | 41420 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641290985 |
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| Product | type-IV secretion system protein TraC |
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| Protein accession | YP_001557043 |
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| Protein GI | 160873037 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.997489 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAC GTATTAAAGA CGATCTCGGC GCACTCTATG CCAGCAGCAA ACAGCAGCAC
AACCATCTGC ATCATGAATT GCCCTATCGC ATTTATGATG ATGCCGAACA AGTATTTGAA
AATGCCAATA CGCTTGGTTT TGGCTTTGCC ATTTCGCTGT TTGGCGGGGC GAATGACGAC
TTGATCAAAA CCATGAACGC CTTGGTGTGC ACACTGCCAG AGGGCGACAA ATGGCATTAT
CAATTCGTCA TGGTGGGTAA CAACCAAGTC GGTGAACTCA TCGAGCAAAA TCAAGCGCTG
CTCAGTGGCC GCAATGCCAT TTGCGATAAA TTTGCCTCAA ATGAAGCTAT CTATGCCAAA
CACAGTTCGA CCAAAGGCTT TGGCACCAAG CTCAGCAGCG CATATCACTA CGATCTAAAG
AACACCAAAG GGTTTTTCTT TGTTTCAACC ACCGAAGACA TGCCAGCACT GCTGGATATG
CGCCTTGGCA TTGAGTCAGA GCTGGCGCAA ACAGGCATGC ACATTCGCCG CTTAGGCGCT
GACGATTTGA TTGAGCATTG CCGCGAGCAT TTAAATTTTT CGCATCAACA AGACCGCGTT
TCGCCCGCTA AATATAACGA GTATCAACCT CTCAACACCC AAATTCTCAG CCCTGACAGT
GAGTTCATCA TTAACCGTGA TTCGGTCAAT ATCCGTCACA CACCGATGCA ATCAGACAAC
AGTGTCGATA CCACCTTAAT CAATCTTGGG CTAAAGGGGC TGCCGAACGA TTTTAGGCTG
TATGCGTTTC CCAACTGCAT TGCATCACTC AGTTACACCA TGAACAGTGT TCAATGTCCT
TATCGTGTCA GCGTGTCTTT TTATATTAAT AAAACGGGTG AGCAAACCAC CCGTAACGAC
AGCAAAATTG GCTCACTAAC GAAAACGGTC AACTCCCCTA TGCGGTTGTT AATCCCCAGC
GCCGCGGATG AACTGGCTGA ACGCAAGGAG ATACAAAAAG GACTCAGCTC ACACGCCTTT
AAAATCACCA CCATGACATT GAATGTCACC CTGTATACGA CAGAAGAGAA ACAACGCCAT
GACACCTCAA AAGCGATTGC GACCTTCCGC ACGGCAGGCA TTGATTTAAT CCGAAACAAT
AAACTGCAAG GCATGTGCAC CCTGTCCACA CTCCCGTTTT CAATGAGCGA AGGCTTTATG
AAAGACAGCC AAAAAGCGGG CCTGTGTTTC ATGATGAAAA CCTCAAACTT GGTGAATTTC
TTACCGATTG TTGCAGACTA CAAACGCTTA TCCGCAGGGT TACTCTTGCC AACAATGCGC
CATCAAATTA GCTATTTCGA TCCGTTTAAC TGCGGCAGTG ATAACTACAA CATGGCCATC
ACGGGCGGCT CAGGGGCAGG GAAGTCATTC TTCATGCAAG CCTTGGTAAA ATCGATTTTT
GCCAAAGGGG GCAAGGCATG GATTCTTGAC AAGGGTCAGA GTTACAAAAA ACTCACTCAA
ACATTAGGCG GCGTCTATCT CGATAGTTCG CAGATTTTCC TAAACCCGTT TACCCACTTA
GGCAAAGTTT TAAGCGTGCG GGATGCGGGT ACTTTTGGCC CTATCCTCGA TGATGAAGGT
CAAGCCATTG ATCCCATCAC CGAAGTGTTG GGAAACATCA CCGCGCTTAT CGCCACCATG
GCATCACCTG ATGAAAAGCT CACCGGATTT CAGACGGCAT TACTCGGCGA TGCTATTTTG
CTGGCATGGC AAAAATGCGG TAACGACACG CTGATTGACG ATGTGCAAAA GGCACTCTAT
GACATTGCCG CACAAAAAAA TGACGATACC CGTATCAGTG ATATCGCTGC GCAATTAAAC
AAGTTCTGTT CAAGCGGTAT TCATGGCGCA ATTTTCAATA AGCCCTCGAT GCTCGATCCC
AATATTGACA TTACCACGCT GGAACTTGAT GGATTTAAAG GCGAGCTACA ACGTCCGGTG
ATTTTCGCGT TGATGGTGAC GATTAGCCAA CAAATGTACT TATCGGGCCA ACGTTCTATT
CCGAAAATCT GTGTGATTGA AGAAGCGTGG TCACTCATGA GCGGCGCGAA TGCGCAAAGT
AAGGATTTCA TCAACGAAGG TTATCGCACA GTGCGTAAGT TCGGCGGCAG CTTTGCCACA
GTAACGCAAG GCATGAACGA CTTCTTTGCC AACGCCGAGG CCGAAGCGGC ACTGAACAGT
TCAGATATTC ATATCACCTT GCGCCAAGGT GATGGCTTTG GGGATTTCTT GAACAAGCAT
CCTGACCACT TCTCGCCCTT CGAGCAACAC ATGATCAAGT CATTCCCCCG CGCCAATGAT
GCGGGTCATT CCTGCGTGAT GCTCAAAGCG GGCGGGCTAG TGTCCTTTCA CCGGATTTTT
GCCGATCCAT GGTCGCGCGC CATGCTCTCA ACCGAGCCGA AAGAATTTGA GCATTGTGAG
AACCTTATTA AAGGCGGCAT GCCGTTACTC GATGCCATTG AACTGACAGC CCAACATTTC
TATCCCGATG ATATGGCTCG TTTTGATGCC ATTTTGTCCG CAGCAGCAAC CCACAAAGAG
GCCGCATAA
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| Protein sequence | MKQRIKDDLG ALYASSKQQH NHLHHELPYR IYDDAEQVFE NANTLGFGFA ISLFGGANDD
LIKTMNALVC TLPEGDKWHY QFVMVGNNQV GELIEQNQAL LSGRNAICDK FASNEAIYAK
HSSTKGFGTK LSSAYHYDLK NTKGFFFVST TEDMPALLDM RLGIESELAQ TGMHIRRLGA
DDLIEHCREH LNFSHQQDRV SPAKYNEYQP LNTQILSPDS EFIINRDSVN IRHTPMQSDN
SVDTTLINLG LKGLPNDFRL YAFPNCIASL SYTMNSVQCP YRVSVSFYIN KTGEQTTRND
SKIGSLTKTV NSPMRLLIPS AADELAERKE IQKGLSSHAF KITTMTLNVT LYTTEEKQRH
DTSKAIATFR TAGIDLIRNN KLQGMCTLST LPFSMSEGFM KDSQKAGLCF MMKTSNLVNF
LPIVADYKRL SAGLLLPTMR HQISYFDPFN CGSDNYNMAI TGGSGAGKSF FMQALVKSIF
AKGGKAWILD KGQSYKKLTQ TLGGVYLDSS QIFLNPFTHL GKVLSVRDAG TFGPILDDEG
QAIDPITEVL GNITALIATM ASPDEKLTGF QTALLGDAIL LAWQKCGNDT LIDDVQKALY
DIAAQKNDDT RISDIAAQLN KFCSSGIHGA IFNKPSMLDP NIDITTLELD GFKGELQRPV
IFALMVTISQ QMYLSGQRSI PKICVIEEAW SLMSGANAQS KDFINEGYRT VRKFGGSFAT
VTQGMNDFFA NAEAEAALNS SDIHITLRQG DGFGDFLNKH PDHFSPFEQH MIKSFPRAND
AGHSCVMLKA GGLVSFHRIF ADPWSRAMLS TEPKEFEHCE NLIKGGMPLL DAIELTAQHF
YPDDMARFDA ILSAAATHKE AA
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