| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4615 |
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| Symbol | |
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| ID | 5756450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009999 |
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| Strand | - |
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| Start bp | 25051 |
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| End bp | 27177 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641290973 |
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| Product | type IV conjugative transfer system coupling protein TraD |
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| Protein accession | YP_001557031 |
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| Protein GI | 160873025 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTAA ACCCCAAACG TACTAAAGGC AGTAACTACA CCCGTGGTGG CCAGATTTTA
TTTCACAATT TGCGGATGTT TCTGCAGATT AACGCCGTGC TTATACGCTG GACGTGTTAT
GGCGTACTCA TCTTAACAGC GCTGCTATGC TATCTCTTCC TTGATAAAGA CACCTTAATG
GGGGCTTATT ATTATTGGAT AAACCAAACG GTTAGCGTGT TTAGACCAGA AAGTCATGTC
ATGCAAACTG AATGGCAAGG CACTGTCTAT ACCAGTACGT TAGGGTCTCA ATTGCAAAAC
CCGATACTGA TTGCGGCCAA CAGCCGCTTT TGGTTATGGA CACAAATTTA TCTCCTTATA
AGCTGTGTGA TTGGCATCGT TTTCCTGTCA GTGGCCATGT GGTATTTCAA GAAAAAAGGG
GATGAGCAAA CCGAGGAACA CTTTATTCGG GGGATGCAAA AAGCCACGCC GAAGGAATTA
GCAAAACAGC TTAAAAAGGA CAGGCGTCAG TCCGATTTCA AGCTCGATGG CATCGGTATT
TTCAAAGAAC GCTTTGAAGT ACAGCACTTG CTACTTGATG GCACCACGGG CGCAGGAAAG
TCCGTGGCGC TGCGTAAGTT TTTAACGTGG ATACGTGAAC GGGGCGACAA AGCCATTATC
TATGACAAAG GCTGTACCTT TGTCAGTAAA TTTTATAATC CTGCTACCGA TGTGCTGCTG
AACCCGTTTG ATGAACGCTG TGCCTATTGG GATGTGTGGT GTGATGCGCA TGAACCCTCG
GATTTTGAGA ACATGGCGAG CGCGCTCATT CCCCAGCATG GCGAGGGCGA TCCATTCTGG
GTGCAATCTG CACGTACTAT TTTTTCATCT ACTGCATTTA AGATGCAAGA TGAACCTAAA
AAGAACCAAA CCACAGAACG ACTGCTTGAA CTCATGCTGA CCAGCGAGCT TGAGTCCTTA
AGTGAGTATC TTAAAGGGAC CGAATCGGCC TCACTGGTAT CAGATAAAAT CCAAAAAACG
GCGATATCCA TTAAGTCGGT CCTCGCGGCC TACATCAAAT CATTACGATT CCTTGCCGGA
CTGGATGAAA AGGACGAACA GGGAAAACTC CTTCGCCGCA AATTTTCAAT TCGTGAGTGG
GTGAAAAACG ATGCCGAAAA TGGCTTTCTA TTTCTATCCA GTAACGCACA GCAACATGCA
TCATTGCGCC CCTTGATCTC AATGTGGCTA TCCATTGCCT CGACCGCCAT TTTAGAACAA
GACGAAGATC CCGACCGCAG AATTTGGGTG TTGATGGATG AAGCACCAAG CTTGCACAAG
TTACCTGAAC TTGCCGAAAC AATCGCCGAA GTGCGTAAGT TCGGCGGTTG TTATGTCATA
GGCATTCAGT CTTTTGCGCA GCTTAAAAAA GTCTATGGCG AAAATGCGGC GCTTGAAATG
TTCGACTTGC TCAACACTCG CTTATTTTTC CGCTCACCCT CTAACGAAAT GGCCAAAATC
TCGTCTCACG ATTTAGGCGA GCAAGAAGTC GATGTCTCTA AAGAGCAATA CAGCTACGGT
GCTAATGAAA TCAGGGATGG CGTATCACTG GGCCATCAAA CCATTACCCG CCCTGTGGTC
ACGCCCTCTG AAATCATGCA GCTTGAAGAT TTACAATTTT GGCTACGCAC GCCTGGCAAT
TATCCCGTTG TAAGAGTGGA TTTAGTCTTT AACCAAATGC GCTCACTGTG CGCCCCGTTT
ATCAAACGTA ACTACACCCC GTCTGAAAAC ATAAAGCAGA TTGAATGGAG TCTGAACTAT
CACCAGTTCA GTGCGGTTCA ACACGTCGAT AAAGCGGATA AAACCAAGCT CCAAAGCATT
CATGACACCA TGTATGAAGG TGATGAAAAC AATGATGAAC GCAGCGCGGA AGCGCAGCGC
ATGACCAAAC TTGCTGAAAA AACCGATGCG GTCGCCCAAA GCCTCATCGA TGCGAAAAAG
GCCAAACCGA CTGAGTTAGC GCTCAAGGAT GCGCAGAAGA AAAAAGCCGC TGAAAAACAA
AAGGCCAATG ACCAGCACAT TGAGGATGCA CAGCGACTTG AAGAGCAACA AATAGCCTCA
GTACACGAAG AAATATCGCT CGACTAA
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| Protein sequence | MTLNPKRTKG SNYTRGGQIL FHNLRMFLQI NAVLIRWTCY GVLILTALLC YLFLDKDTLM
GAYYYWINQT VSVFRPESHV MQTEWQGTVY TSTLGSQLQN PILIAANSRF WLWTQIYLLI
SCVIGIVFLS VAMWYFKKKG DEQTEEHFIR GMQKATPKEL AKQLKKDRRQ SDFKLDGIGI
FKERFEVQHL LLDGTTGAGK SVALRKFLTW IRERGDKAII YDKGCTFVSK FYNPATDVLL
NPFDERCAYW DVWCDAHEPS DFENMASALI PQHGEGDPFW VQSARTIFSS TAFKMQDEPK
KNQTTERLLE LMLTSELESL SEYLKGTESA SLVSDKIQKT AISIKSVLAA YIKSLRFLAG
LDEKDEQGKL LRRKFSIREW VKNDAENGFL FLSSNAQQHA SLRPLISMWL SIASTAILEQ
DEDPDRRIWV LMDEAPSLHK LPELAETIAE VRKFGGCYVI GIQSFAQLKK VYGENAALEM
FDLLNTRLFF RSPSNEMAKI SSHDLGEQEV DVSKEQYSYG ANEIRDGVSL GHQTITRPVV
TPSEIMQLED LQFWLRTPGN YPVVRVDLVF NQMRSLCAPF IKRNYTPSEN IKQIEWSLNY
HQFSAVQHVD KADKTKLQSI HDTMYEGDEN NDERSAEAQR MTKLAEKTDA VAQSLIDAKK
AKPTELALKD AQKKKAAEKQ KANDQHIEDA QRLEEQQIAS VHEEISLD
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