Gene Sbal195_4592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal195_4592 
Symbol 
ID5756426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS195 
KingdomBacteria 
Replicon accessionNC_009998 
Strand
Start bp73478 
End bp75604 
Gene Length2127 bp 
Protein Length708 aa 
Translation table11 
GC content47% 
IMG OID641290950 
Producttype IV conjugative transfer system coupling protein TraD 
Protein accessionYP_001557008 
Protein GI160873001 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID[TIGR02759] type IV conjugative transfer system coupling protein TraD 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCTTAA ACCCCAAACG TACTAAAGGC AGTAACTACA CCCGTGGTGG CCAGATTTTA 
TTTCACAATT TGCGGATGTT CCTGCAGATT AACGCCGTGC TTATCCGCTG GACGTGTTAT
GGCGTGCTCA TCTTAACAGC GCTGCTATGC TACCTTTTCA TTGATAAAGA TACCTTAACG
GGCGCTTATT ATTATTGGAT AAACCAAACA GTTAGCGTGT TTAGACCAGA AAGTCATGTT
ATGCAAACTG AATGGCAAGG CACTGTCTAT ACCAGTACGT TAGGGTCTCA ATTGCAAAAC
CCGATACTGA TTGCGGCCAA CAGCCGCTTT TGGTTGTGGG CACAAATTTA CCTCCTCATA
AGCAGTGTAA TTGGCATCGT TTTTCTGTCC GTGGCCATGT GGTATTTCAA GAAAAAAGGG
GACGAGCAAA CCGAGGAACA CTTTATTCGG GGGATGCAAA AAGCCACGCC GAAGGAATTA
GCAAAACAGC TTAAAAAGGA CAAGCGCCAA TCCGACTTCA AGCTCGATGG CATCGGTATT
TTCAAAGAAC GCTTTGAAGT ACAACACTTG TTACTCGATG GCACCACGGG TGCGGGAAAG
TCCGTGGCGC TGCGTAAGTT TTTAACGTGG ATACGTGAAC GGGGCGACAA AGCCATTATC
TATGACAAAG GCTGTACCTT TGTCAGTAAA TTTTATAATC CAGCAACGGA CGTACTACTA
AACCCGTTTG ATGAACGCTG TGCCTATTGG GATGTGTGGT GTGATGCGCA TGAACCCTCA
GATTTTGAGA ACATGGCGAG CGCGCTCATT CCCCAACACG GCGAGGGCGA TCCATTTTGG
GTGCAATCTG CTCGCACCAT TTTTTCATCT ACTGCATTTA AGATGCAAGA TGAACCTAAA
GCGAACCAAA CCACTGAACG ACTGCTTGAA CTCATGCTGA CCAGCGAGCT TGAGTCCTTA
AGTGAGTATC TTAAAGGGAC CGAATCGGCC TCACTGGTAT CAGATAAAAT CCAAAAAACG
GCGATATCCA TTAAATCAGT CCTCGCGGCC TACATCAAAT CATTACGATT CCTTGCCGGA
CTGGATGAAA AGGACGAACA GGGAAAACTC CTTCGCCGCA AATTTTCAAT CCGTGAGTGG
GTGAAAAACG ATGCCGAAAA TGGCTTCCTA TTTCTATCCA GTAACGCACA GCAACATGCT
TCATTGCGGC CACTAATCTC AATGTGGCTA TCCATTGCCT CGACCGCCAT TTTAGAACAA
GACGAAGATC CCGACCGCAG AATTTGGGTG TTGATGGATG AAGCACCAAG CTTGCACAAG
TTACCTGAAC TTGCCGAAAC AATCGCCGAA GTGCGTAAGT TCGGCGGTTG TTATGTCATA
GGCATTCAGT CTTTTGCGCA GCTTAAAAAA GTCTATGGCG AAAATGCGGC GCTTGAAATG
TTCGACTTGC TCAACACTCG CTTATTTTTC CGCTCACCCT CTAACGAAAT GGCCAAAATC
TCGTCTCACG ATTTAGGCGA GCAAGAAGTC GATGTCTCTA AAGAGCAATA CAGCTACGGC
GCTAATGAAA TCAGGGATGG CGTATCACTG GGCCATCAAA CCATTACCCG CCCTGTGGTC
ACGCCCTCTG AAATCATGCA GCTTGAAGAT TTACAATTCT GGCTACGCAC GCCTGGCAAT
TATCCCGTGG TAAGAGTGGA TTTAGAGTTT AACCAAATGC GCTCACTGTG CGCCCCATTT
ATCAAACGCA ACTACACCCC GTCTGAAAAC ATAAAGCAGA TTGAATGGAG CCTGAACTAT
CACCAGTTCA GTGCGGTTCA ACACGTCGAT AAGGCAGATA AAACCAAGCT TCAAAGCATT
CATGACACCA TGTATGAAGG GGATGAAAAC AATGATGAAC GCAGCGCGGA AGCACAGCGC
ATGACCAAAC TTGCTGAAAA AACCGATGCG GTCGCCCAAA GCCTCATCGA TGCGAAAAAG
GCCAAACCGA CTGAGTTAGC GCTCAAGGAT GCAGAGAAGA AAAAAGCCGC TGAAAAACAA
AAGGCCAATG ACCAGCACAT TGAGGATGCA CAGCGACTTG AAGAGCAACA AATAGCCTCA
GTACATGAAG AAATATCGCT CGACTAA
 
Protein sequence
MTLNPKRTKG SNYTRGGQIL FHNLRMFLQI NAVLIRWTCY GVLILTALLC YLFIDKDTLT 
GAYYYWINQT VSVFRPESHV MQTEWQGTVY TSTLGSQLQN PILIAANSRF WLWAQIYLLI
SSVIGIVFLS VAMWYFKKKG DEQTEEHFIR GMQKATPKEL AKQLKKDKRQ SDFKLDGIGI
FKERFEVQHL LLDGTTGAGK SVALRKFLTW IRERGDKAII YDKGCTFVSK FYNPATDVLL
NPFDERCAYW DVWCDAHEPS DFENMASALI PQHGEGDPFW VQSARTIFSS TAFKMQDEPK
ANQTTERLLE LMLTSELESL SEYLKGTESA SLVSDKIQKT AISIKSVLAA YIKSLRFLAG
LDEKDEQGKL LRRKFSIREW VKNDAENGFL FLSSNAQQHA SLRPLISMWL SIASTAILEQ
DEDPDRRIWV LMDEAPSLHK LPELAETIAE VRKFGGCYVI GIQSFAQLKK VYGENAALEM
FDLLNTRLFF RSPSNEMAKI SSHDLGEQEV DVSKEQYSYG ANEIRDGVSL GHQTITRPVV
TPSEIMQLED LQFWLRTPGN YPVVRVDLEF NQMRSLCAPF IKRNYTPSEN IKQIEWSLNY
HQFSAVQHVD KADKTKLQSI HDTMYEGDEN NDERSAEAQR MTKLAEKTDA VAQSLIDAKK
AKPTELALKD AEKKKAAEKQ KANDQHIEDA QRLEEQQIAS VHEEISLD