Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_4592 |
Symbol | |
ID | 5756426 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009998 |
Strand | - |
Start bp | 73478 |
End bp | 75604 |
Gene Length | 2127 bp |
Protein Length | 708 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641290950 |
Product | type IV conjugative transfer system coupling protein TraD |
Protein accession | YP_001557008 |
Protein GI | 160873001 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCTTAA ACCCCAAACG TACTAAAGGC AGTAACTACA CCCGTGGTGG CCAGATTTTA TTTCACAATT TGCGGATGTT CCTGCAGATT AACGCCGTGC TTATCCGCTG GACGTGTTAT GGCGTGCTCA TCTTAACAGC GCTGCTATGC TACCTTTTCA TTGATAAAGA TACCTTAACG GGCGCTTATT ATTATTGGAT AAACCAAACA GTTAGCGTGT TTAGACCAGA AAGTCATGTT ATGCAAACTG AATGGCAAGG CACTGTCTAT ACCAGTACGT TAGGGTCTCA ATTGCAAAAC CCGATACTGA TTGCGGCCAA CAGCCGCTTT TGGTTGTGGG CACAAATTTA CCTCCTCATA AGCAGTGTAA TTGGCATCGT TTTTCTGTCC GTGGCCATGT GGTATTTCAA GAAAAAAGGG GACGAGCAAA CCGAGGAACA CTTTATTCGG GGGATGCAAA AAGCCACGCC GAAGGAATTA GCAAAACAGC TTAAAAAGGA CAAGCGCCAA TCCGACTTCA AGCTCGATGG CATCGGTATT TTCAAAGAAC GCTTTGAAGT ACAACACTTG TTACTCGATG GCACCACGGG TGCGGGAAAG TCCGTGGCGC TGCGTAAGTT TTTAACGTGG ATACGTGAAC GGGGCGACAA AGCCATTATC TATGACAAAG GCTGTACCTT TGTCAGTAAA TTTTATAATC CAGCAACGGA CGTACTACTA AACCCGTTTG ATGAACGCTG TGCCTATTGG GATGTGTGGT GTGATGCGCA TGAACCCTCA GATTTTGAGA ACATGGCGAG CGCGCTCATT CCCCAACACG GCGAGGGCGA TCCATTTTGG GTGCAATCTG CTCGCACCAT TTTTTCATCT ACTGCATTTA AGATGCAAGA TGAACCTAAA GCGAACCAAA CCACTGAACG ACTGCTTGAA CTCATGCTGA CCAGCGAGCT TGAGTCCTTA AGTGAGTATC TTAAAGGGAC CGAATCGGCC TCACTGGTAT CAGATAAAAT CCAAAAAACG GCGATATCCA TTAAATCAGT CCTCGCGGCC TACATCAAAT CATTACGATT CCTTGCCGGA CTGGATGAAA AGGACGAACA GGGAAAACTC CTTCGCCGCA AATTTTCAAT CCGTGAGTGG GTGAAAAACG ATGCCGAAAA TGGCTTCCTA TTTCTATCCA GTAACGCACA GCAACATGCT TCATTGCGGC CACTAATCTC AATGTGGCTA TCCATTGCCT CGACCGCCAT TTTAGAACAA GACGAAGATC CCGACCGCAG AATTTGGGTG TTGATGGATG AAGCACCAAG CTTGCACAAG TTACCTGAAC TTGCCGAAAC AATCGCCGAA GTGCGTAAGT TCGGCGGTTG TTATGTCATA GGCATTCAGT CTTTTGCGCA GCTTAAAAAA GTCTATGGCG AAAATGCGGC GCTTGAAATG TTCGACTTGC TCAACACTCG CTTATTTTTC CGCTCACCCT CTAACGAAAT GGCCAAAATC TCGTCTCACG ATTTAGGCGA GCAAGAAGTC GATGTCTCTA AAGAGCAATA CAGCTACGGC GCTAATGAAA TCAGGGATGG CGTATCACTG GGCCATCAAA CCATTACCCG CCCTGTGGTC ACGCCCTCTG AAATCATGCA GCTTGAAGAT TTACAATTCT GGCTACGCAC GCCTGGCAAT TATCCCGTGG TAAGAGTGGA TTTAGAGTTT AACCAAATGC GCTCACTGTG CGCCCCATTT ATCAAACGCA ACTACACCCC GTCTGAAAAC ATAAAGCAGA TTGAATGGAG CCTGAACTAT CACCAGTTCA GTGCGGTTCA ACACGTCGAT AAGGCAGATA AAACCAAGCT TCAAAGCATT CATGACACCA TGTATGAAGG GGATGAAAAC AATGATGAAC GCAGCGCGGA AGCACAGCGC ATGACCAAAC TTGCTGAAAA AACCGATGCG GTCGCCCAAA GCCTCATCGA TGCGAAAAAG GCCAAACCGA CTGAGTTAGC GCTCAAGGAT GCAGAGAAGA AAAAAGCCGC TGAAAAACAA AAGGCCAATG ACCAGCACAT TGAGGATGCA CAGCGACTTG AAGAGCAACA AATAGCCTCA GTACATGAAG AAATATCGCT CGACTAA
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Protein sequence | MTLNPKRTKG SNYTRGGQIL FHNLRMFLQI NAVLIRWTCY GVLILTALLC YLFIDKDTLT GAYYYWINQT VSVFRPESHV MQTEWQGTVY TSTLGSQLQN PILIAANSRF WLWAQIYLLI SSVIGIVFLS VAMWYFKKKG DEQTEEHFIR GMQKATPKEL AKQLKKDKRQ SDFKLDGIGI FKERFEVQHL LLDGTTGAGK SVALRKFLTW IRERGDKAII YDKGCTFVSK FYNPATDVLL NPFDERCAYW DVWCDAHEPS DFENMASALI PQHGEGDPFW VQSARTIFSS TAFKMQDEPK ANQTTERLLE LMLTSELESL SEYLKGTESA SLVSDKIQKT AISIKSVLAA YIKSLRFLAG LDEKDEQGKL LRRKFSIREW VKNDAENGFL FLSSNAQQHA SLRPLISMWL SIASTAILEQ DEDPDRRIWV LMDEAPSLHK LPELAETIAE VRKFGGCYVI GIQSFAQLKK VYGENAALEM FDLLNTRLFF RSPSNEMAKI SSHDLGEQEV DVSKEQYSYG ANEIRDGVSL GHQTITRPVV TPSEIMQLED LQFWLRTPGN YPVVRVDLEF NQMRSLCAPF IKRNYTPSEN IKQIEWSLNY HQFSAVQHVD KADKTKLQSI HDTMYEGDEN NDERSAEAQR MTKLAEKTDA VAQSLIDAKK AKPTELALKD AEKKKAAEKQ KANDQHIEDA QRLEEQQIAS VHEEISLD
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