| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4538 |
|---|
| Symbol | |
|---|
| ID | 5756373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009998 |
|---|
| Strand | - |
|---|
| Start bp | 15515 |
|---|
| End bp | 16333 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641290897 |
|---|
| Product | type-F conjugative transfer system secretin TraK |
|---|
| Protein accession | YP_001556955 |
|---|
| Protein GI | 160872948 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02756] type-F conjugative transfer system secretin TraK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.30335 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.434856 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTG CTAACCCACT TGTTTTCGCA GCCTGCGCGC TTTTTCCTAT GAGCGTGTTA
GCGGCAAATA CGCCCCCAAA ACACTACGGA TTCAATGACA GTGAAACGGT TCCTATTGAG
CTGTCGAGTG TTGATATCAA CCGCTTAGTC GTTGAAGGTG ACAAAATCAC CTCGATTGAT
TGTCCAGAAG GATTTTGCGT TGTCACTGGC ACGAAATCGG ATAAATCCGG TGCAGCGCGC
GTTAACCTCA ATTTGGCCAT GCCATTCACA GCCTATGTAT CAACAGAAAA GGGCAGACAT
TTCGGCTTAT TCATCAGCCC TAAAGCCATT CCTGCCGTGA CCTCTATCTT CACTGCAGAA
CATTATCGCG AAGAACAACC CTCCGTTTTC GATAAGAAAA CCCCTTATCC AACCATGATG
ACCGAGTTCA CCGCGCAAAT GATCCGCTAC CTCGCCACAG GCAAACCGAT TGACGGTTAT
CGTGTGCATG TCGTCAATGA TGACCTTGAA CGCACCACGG TAGACAGTGA GCCGAGAGGC
ACGGAAACAT CTATCGATGA CGCGATGTTT ACTCGCTTAA ATGAGCAACA AATGCCTAAA
CCAGCAGGAC TAACAACAGA ACCTGCTTTC GTGTTCACTG GTAAGCATTT CAACGGCATC
ATTTATCGCG TAACAAACCA CGCAGCACTC CCAGTCACCC TCACCACAGC GCAGTTCTAC
TCACCAACGA CGCGAGCCGC AGCCTTATCA ACCTATGAAT TAGCACCACA ACAAACAGGC
CACCTGTTTG TTGTCTCGGG CGGGGAGAGC ATGCAATGA
|
|---|
| Protein sequence | MKIANPLVFA ACALFPMSVL AANTPPKHYG FNDSETVPIE LSSVDINRLV VEGDKITSID
CPEGFCVVTG TKSDKSGAAR VNLNLAMPFT AYVSTEKGRH FGLFISPKAI PAVTSIFTAE
HYREEQPSVF DKKTPYPTMM TEFTAQMIRY LATGKPIDGY RVHVVNDDLE RTTVDSEPRG
TETSIDDAMF TRLNEQQMPK PAGLTTEPAF VFTGKHFNGI IYRVTNHAAL PVTLTTAQFY
SPTTRAAALS TYELAPQQTG HLFVVSGGES MQ
|
|---|
| |