Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_4535 |
Symbol | |
ID | 5756370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009998 |
Strand | - |
Start bp | 10924 |
End bp | 13512 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641290894 |
Product | type-IV secretion system protein TraC |
Protein accession | YP_001556952 |
Protein GI | 160872945 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.862751 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACAAC GTATTAAAGA CGATCTCGGC GCACTCTATG CCAGCAGCAA ACAGCAGCAC AACCATCTGC ATCATGAATT GCCCTATCGC ATTTATGATG ATGCCGAACA AGTATTTGAA AATGCCAATA CGCTTGGTTT TGGCTTTGCC ATTTCGCTGT TTGGCGGGGC TAATGACGAC TTGATCAAAA CCATGAACGC CTTGGTGTGC ACACTGCCAG AGGGCGACAA ATGGCACTAT CAATTCGTCA TGGTGGGTAA CAACCAAGTC GGTGAACTCA TCGAGCAAAA TCAAGCGCTG CTCAGTGGTC GCAATGCCAT TTGCGATAAA TTTGCTAATA ATGAAGCTAT CTATGCCAAA CACAGTTCGA CCAAAGGCTT TGGCACCAAG CTCAGCAGCG CATACCACTA CGATTTAAAG AACACCAAAG GGTTTTTCTT TGTTTCAACC ACAGAGGACA TGCCTGCACT GCTGGATATG CGTCTTGGCG TTGAGTCAGA ACTGGCGCAA ACAGGCATGC ACATTCGCCG CTTAGGCGCT GACGATCTGA TTGAGCATTG CCGCGAACAC TTAAATTTTT CGCATCAACA AGATCGCGTC ACGCCCGCTA AATATAACGA GTATCAACCT CTCAACACCC AAATTCTCAG CCCTGACAGT GAGTTCATCA TTAATCGTGA TTCGGTCAAT ATCCGTCACA CACCGATGCA ATCCGACAAC AGTGTCGATA CCACCCTAAT CAATCTAGGG CTTAAAGGGC TGCCGAACGA CTTTAGGCTA TATGCGTTTC CCAACTGTAT TGCATCACTC AGTTACACCA TGAACAGTGT TCAATGCCCT TACCGTGTCA GCGTGTCGTT TTATATTAAT AAAACGGGTG AGCAAACAAC CCGTAACGAC AGCAAAATTG GCTCACTAAC CAAAACGGTC AACTCCCCTA TGCGGTTGTT GATCCCCAGT GCCGCGGATG AACTGGCTGA ACGCAAGGAG ATACAAAAAG GACTCAGCTC ACACGCCTTT AAAATCACCA CCATGACATT GAATGTCACC CTGTATACGA CAGAAGAGAA GCACCGCCAC GACACCTCAA AGGCGATTGC GACATTTCGC ACGGCAGGCA TTGATTTAAT CCGAAACAAT AAACTGCAAG GCATGTGCAC ACTGTCCACC CTCCCGTTCT CAATGAGCGA AGGCTTTATG AAAGACAGCC AAAAAGCGGG CCTGTGTTTC ATGATGAAAA CCTCAAACTT GGTGAATTTC TTACCGATTG TTGCAGACTA CAAACGCTTA TCAGCAGGGT TACTCTTGCC AACAATGCGC CATCAAATTA GCTATTTCGA TCCGTTTAAC TGCGGCAGTG ATAACTACAA CATGGCGATT ACGGGCGGCT CAGGGGCAGG GAAGTCATTC TTCATGCAAG CCTTAGTAAA ATCGATTTTT GCCAAAGGGG GCAAGGCATG GATTCTTGAC AAGGGTCAGA GTTACAAAAA ACTCACTCAA ACATTAGGCG GCGTCTATCT CGACAGTTCG CAGATTTTCC TAAACCCGTT TACCCACTTA GGCAAAGTTT TAAGCGTGCG GGATGCGGGT ACTTTTGGCC CAATCCTCGA TGATGAAGGT CAAGCCATTG ATCCCATCAC CGAAGTGTTG GGAAACATCA CCGCGCTTAT CGCCACCATG GCATCACCTG ATGAAAAGCT CACCGGATTT CAGACGGCAT TACTCGGCGA TGCTATTTTG CTGGCATGGC AAAAATGCGG TAACGACACG CTGATTGACG ATGTGCAAAA GGCACTCTAT GACATTGCCG CGCAAAAAAA TGACGATACC CGTATCAGTG ATATCGCTGC GCAATTAAAC AAGTTCTGTT CAAGCGGTAT TCATGGCGCG ATTTTCAATA AGCCCTCGAT GCTCGATCCC AATATCGATA TCACCACGCT TGAACTCGAT GGATTTAAAG GCGAGCTACA ACGTCCAGTG ATTTTCGCGT TAATGGTGAC GATTAGCCAA CAAATGTACT TATCGGGCCA ACGTTCTATT CCGAAAATCT GTGTGATTGA AGAAGCGTGG TCGCTCATGA GCGGCGCGAA TGCGCAAAGT AAGGATTTCA TCAACGAAGG TTATCGCACA GTGCGTAAGT TCGGCGGCAG CTTTGCCACA GTAACGCAAG GCATGAACGA CTTCTTTGCC AACGCCGAGG CCGAAGCGGC ACTGAACAGT TCAGATATTC ATATCACCTT GCGACAAGGT GATGGCTTTG GGGATTTCTT GAACAAGCAT CCTGACCACT TCTCGCCCTT CGAGCAACAC ATGATCAAGT CATTCCCCCG CGCCAATGAT GCGGGTCATT CCTGCGTCAT GCTCAAAGCG GGCGGGCTAG TGTCCTTTCA CCGAATTTTT GCCGATCCAT GGTCGCGCGC CATGCTCTCA ACCGAGCCTA AAGAATTTGA GCATTGTGAG AACCTTATTA AAGGCGGCAT GCCGTTACTC GATGCCATTG AACTGACAGC CCAACATTTC TATCCCGATG ATATGGCCCG TTTTGATGCC ATTTTGTCCG CAGCAGCAAC CCACAAAGAG GCCGCATAA
|
Protein sequence | MKQRIKDDLG ALYASSKQQH NHLHHELPYR IYDDAEQVFE NANTLGFGFA ISLFGGANDD LIKTMNALVC TLPEGDKWHY QFVMVGNNQV GELIEQNQAL LSGRNAICDK FANNEAIYAK HSSTKGFGTK LSSAYHYDLK NTKGFFFVST TEDMPALLDM RLGVESELAQ TGMHIRRLGA DDLIEHCREH LNFSHQQDRV TPAKYNEYQP LNTQILSPDS EFIINRDSVN IRHTPMQSDN SVDTTLINLG LKGLPNDFRL YAFPNCIASL SYTMNSVQCP YRVSVSFYIN KTGEQTTRND SKIGSLTKTV NSPMRLLIPS AADELAERKE IQKGLSSHAF KITTMTLNVT LYTTEEKHRH DTSKAIATFR TAGIDLIRNN KLQGMCTLST LPFSMSEGFM KDSQKAGLCF MMKTSNLVNF LPIVADYKRL SAGLLLPTMR HQISYFDPFN CGSDNYNMAI TGGSGAGKSF FMQALVKSIF AKGGKAWILD KGQSYKKLTQ TLGGVYLDSS QIFLNPFTHL GKVLSVRDAG TFGPILDDEG QAIDPITEVL GNITALIATM ASPDEKLTGF QTALLGDAIL LAWQKCGNDT LIDDVQKALY DIAAQKNDDT RISDIAAQLN KFCSSGIHGA IFNKPSMLDP NIDITTLELD GFKGELQRPV IFALMVTISQ QMYLSGQRSI PKICVIEEAW SLMSGANAQS KDFINEGYRT VRKFGGSFAT VTQGMNDFFA NAEAEAALNS SDIHITLRQG DGFGDFLNKH PDHFSPFEQH MIKSFPRAND AGHSCVMLKA GGLVSFHRIF ADPWSRAMLS TEPKEFEHCE NLIKGGMPLL DAIELTAQHF YPDDMARFDA ILSAAATHKE AA
|
| |