| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4376 |
|---|
| Symbol | |
|---|
| ID | 5756207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 5171170 |
|---|
| End bp | 5173434 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641290732 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001556794 |
|---|
| Protein GI | 160877478 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTTCAAT GGCTGAAAGG TTTTTTGTTT ATTAGGGATC GAGACTTTTT AAATCCTGAT
AGAACAATAT TAAAAACCAG CTTATTGCGG ATTATTCTGC TCAGTGGCGC GATGTTGACC
GCTAGCATAG TGCTGCATAG CTCTTTAATT GCGTATCAGT TAAACCTCGC TTTCATTATC
AGCATTACGG TCAGTTTTTT AACCGTACTC TTCTTAACTT TATGGTTTAC CGGCAAATAT
TTACTCGCCA GCTCAATCAG TCTGTTGGCT ATGGTCATTG CCGCCTGCAT TTCTATACTC
TTGTTTGTCC CAGACTTTAA CTTATCCCAG GCAGGTATTA CCTTCTTATA TACTCTTCCC
TTAATGGCGC TTTTTCTATT TGGCAGAAAA GTAGCCGTTA TTATGATGTT TTTTAATGTA
TTGCCTTTTC TACTGCTACT GCGTAACCAA AATATTCCCC CGATTATTGA TATTGATATC
AGTCTGCCTG CAACCCACGC TTATCTGAAT GGCTTGCTGT TTGTCTTTTT TAATATCTGT
ATTCCCTTGT CGGCGATGCG CCTGCTAAAA ACCCAGAAAG TCCATGCGCA GCAAATGATC
CAGCATCAAA ATGATCTGCA ACGTACCTTA GATCAATATG CTGAAATCTT TGAAAATAAT
GGTACCGCTT CCTTCTTCTG TAATGAGGAC GGCGTGATTC TCAACCTGAA TAATGCGGCC
AAAGAAATCG CCGGAGAGGT CACACTAAAC CGCACTCGCC TATGTGACAT TTTTGAACTT
ACCGAAGATA CCAGCACAAA TTTACTGGCG GCCGCGTTTC CGACCCATTT AAAGAACAAT
AACAGTATTA AATATCTGCT GCAGAAAGCC TCATTAGAGC ACCATGACAC TTTGTTGTTT
CACTGCCACG ATGTCACTGA ACAGGCAAAC CATGCGATTG AACTAAGCCG ACTTAAAAAG
CACCATATCA GCACACATTT CTATGATTTA GTGACCGGAT TACCCAACGA GAATCACTGG
TATAACCCAG CCCCAAGTAC GATCCATTTG GATATGACAG TCGCCTTAGT CAAAATTGAT
AATCTGAGTC AAATCAATGC CGCCTTCGGT ATCAGCGTCG GGGATGCCAT CCTAAAAGCC
TTTGCGACCG AACTCAAAAA TCGCTTTGGT CATCACGCAA AAATATACCG GTTTAGGGGA
GCCTCGTTTG CGCTTGAGTT TACCAGCCTG CCGCTGATCT CCCCCGAAAA CCTCGCGCTA
CAATTACGCG AGCGTATTCC AACAAACCTG CAGCTTAAAC ATGAACAACA AATTGAATAT
CATCTCGAGT GCCGAGTCGG TTGCAGTTCG GGTAATAAAG CCTCACCGCA GCAAGCCGCA
GAGCAATGTT TAATTGCCAT TAAGCAAACC ACCCAAGCTA GCCCAGTCAT GGTGTATTAC
ATTGGTTTGA TTAATAATCT TCTCGAAGCC TCATCGCAGA AAGCCAAAAT TCGCGACGCA
TTGAAACACA ATCGTCTGGA AATGTGGCTA CAGCCTAAAG TAAGGGCAGA TGGCCACATT
ATTAGCTTTG AAGCGCTGGC AAGAATGTTC GATGAAGACG GCACTATGAT TATGCCGAAC
ACGTTTATTC CCATCATAGA GTCATCCCAA TTACAGGCGA TTTTTGCGAT AAAAGTCTTC
AGGCAATTAC TACAACTGAT CCGTTCTTGG CCGAAAAACG TGCCTCTGGT CAGGATTGCC
TTCAACTTAT CTGGGCAAGA TATTTTGTCG GATCGCTTCT TTAAGGTGTT GATCCAAACC
TATATGAATC ACCCCGAACT CATCCCATTA TTAGAAATTG AAATCACTGA AACCTCAGTA
TTTTCAACCC ATAAAGAAAC GGGCCGACGC CTAAACACCT TAGCTCGCAT GGGAGTTTCT
ATCGCCATTG ACGATTTTGG CACTGGCCAT GCCTCATTAA GCCAACTCAT CGATATCAGT
GCCGACACGA TAAAAATCGA CCGCTGCTTT GTCAGTCAAA TGGGCATTAG TGAACGCCAT
ACCCAAATTG TCAACGCCGC CATCCTGTTA GCCAAGAGCT TAAAACTCAA CGTCATTGCC
GAAGGTATAG AAACCGAAGC CCAGTTATTG CAACTCACGG CGTTAGGATG TGAACAATTT
CAAGGCTATC TATTCGGTAA ACCCGCACCC GCGAATCTAT GGCTGAAAAC CTTTCAAATG
CAAACGCCTA CACACTGGTT CGCCAATAAA AAGAGCGCCA ACTGA
|
|---|
| Protein sequence | MLQWLKGFLF IRDRDFLNPD RTILKTSLLR IILLSGAMLT ASIVLHSSLI AYQLNLAFII
SITVSFLTVL FLTLWFTGKY LLASSISLLA MVIAACISIL LFVPDFNLSQ AGITFLYTLP
LMALFLFGRK VAVIMMFFNV LPFLLLLRNQ NIPPIIDIDI SLPATHAYLN GLLFVFFNIC
IPLSAMRLLK TQKVHAQQMI QHQNDLQRTL DQYAEIFENN GTASFFCNED GVILNLNNAA
KEIAGEVTLN RTRLCDIFEL TEDTSTNLLA AAFPTHLKNN NSIKYLLQKA SLEHHDTLLF
HCHDVTEQAN HAIELSRLKK HHISTHFYDL VTGLPNENHW YNPAPSTIHL DMTVALVKID
NLSQINAAFG ISVGDAILKA FATELKNRFG HHAKIYRFRG ASFALEFTSL PLISPENLAL
QLRERIPTNL QLKHEQQIEY HLECRVGCSS GNKASPQQAA EQCLIAIKQT TQASPVMVYY
IGLINNLLEA SSQKAKIRDA LKHNRLEMWL QPKVRADGHI ISFEALARMF DEDGTMIMPN
TFIPIIESSQ LQAIFAIKVF RQLLQLIRSW PKNVPLVRIA FNLSGQDILS DRFFKVLIQT
YMNHPELIPL LEIEITETSV FSTHKETGRR LNTLARMGVS IAIDDFGTGH ASLSQLIDIS
ADTIKIDRCF VSQMGISERH TQIVNAAILL AKSLKLNVIA EGIETEAQLL QLTALGCEQF
QGYLFGKPAP ANLWLKTFQM QTPTHWFANK KSAN
|
|---|
| |