Gene Sbal195_4348 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal195_4348 
Symbol 
ID5756179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS195 
KingdomBacteria 
Replicon accessionNC_009997 
Strand
Start bp5138453 
End bp5142100 
Gene Length3648 bp 
Protein Length1215 aa 
Translation table11 
GC content48% 
IMG OID641290704 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) 
Protein accessionYP_001556766 
Protein GI160877450 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCCAGC TTGAAGGACT ACACATAAAG TCATTTATTC CATACCTTAA GGTAAATATT 
TTCATCGCCT TAGCTTACAT TGTTGTAGGT AAATTAGGCT TGATGATTGC TTTGCCGCCT
GGATATTCTG CGGCGATTTG GCCTGCTGCA GGGATTGCTA TTGCCGCATG TATCCTATGG
AAAGAGTATG TCCCTTGGGT TGGCGTGTTA ATTGGTTCGC TGCTGATTAA CATCAATATT
GGCGGGCATA TCCATTGGGG CTGGTTACCC TTTGCTATCT CTATTGGGTC TTGTATACAG
GCTGTGCTTT CTGCTCATGT TCTTGGCCGA GTCGATCATT TATTCACCTT AGATAATCCT
AATACCGTTA TTAAATCCTG CTTGAGCTTA GCCTTAACTT GTATTGTGGC GACCGTTTTT
GGCAACAGTG CCTTAGTGAT CAACGGTACG ATTCCACCAT CTGATTTATT GGGAAGTTTA
GTGAATTGGT GGACGGGGGA TTTACTCGGC GCCGTGATCT TTATCCCTTT GACTATGTTG
CTATTTGATA AGCGGACTAT CTGGCGTGCT CGCCGCATTC AGACGGGCAT TCCTTTGCTG
GTGGGCTTTT TATTCTGCGT GGGGATTTAT TACTACTCGG ATATGAACCA GCGCCAACAG
TTGCAGGATA AGTTTCAGAT CCAATCCAAT GCCGTGATTA GCAATATTGA AAGTTTTCAA
GAGGCTAACC TGCAGCAAAT CGTCGCCCTA GCGAGCTTAT TCGATAATAG CGAGCAGGTT
TCTGAGGATG AGTTTGTGCA ATTTGGCAAA CGTAACATGC TGCAGCAAGA TGGCTTTAGA
GCTTGGTCTT GGTCGCCGTT AGTGGCGGCC GCCGATCTGC CCAGTTTTGA GGCATCGACC
CGCTCAGCCA TTGGCGGCCC TTACAAAGTC ACGCGGCCTC AAGGCTGGCA AACTAATACC
GATGGCTGGT TAGTGCCTGT GATGTACATT CAGCCAATCA TAGGCAATGA GGCGGCGCTG
GGATTAGATC TCAATAGCGA GCCGACACGA GCCGCTGCCA TTGCCAAAGT GCGCGCGACC
TTAGCGCCTG TGATGACGGC TAAGATTCAA TTAGCTCAAG ATCCCAATGG CCCGGGTGGT
ACTTTACTCA TTGCGCCCGC GTTCGACCGA CTAGGCAGAA TCTCAGGATT TTGTTCAGCT
GTGATTGATT TGCAAAGCAT TATTAATGAT GTTGAGAGCG TGAAGGGATT GCAGTGGAAA
CTCTCCGACA TGAGTGCGGG CGGTGCATTA CTTTATAGCA ATACCACGAA GTCGTTTCCC
GAGTTTAGCA ACAAGCTATT TAGCGATAAA ACCGGCCAGT ATTTTCAGGC AAGCCTGATG
CTAGCGGATC GGCATTGGCA CATAGTGATT TATCAATCCT ATGCTGTGCT GATGGGCGAT
ACTTTTAGCT TATCGCTACT TATGCTGCTC CTCGCCTTTA TCACCTGTGC TGTTGTGGGG
GGTATGACGC TGGTTTCCTC CGGCGAGCGC CAACGTATTG CCGAGAAAGT GACTGAAAAA
ACCATGGCCT TGTCGAAGGA AATTGCCCGC CGTCAGGCTT TTCAGGCCAC CTTGGTACAA
AGCGAGCAAA GATATCGTAA TTTGTTTGAT AAGGCGCCCG TGGGGCATGT GCTTAAACGT
TTAGATGATG GTCAGTTTGT GGCGATTAAC CCCGCATTCG AAGCCATGAC GGGTTACTCA
CTCGATGAGT TAAATCAGCT TGACCCTTGG GATCTCACGC CAAAGCGTTA TCAATTAAGT
GAAACTGAGC AATTAGAACG CCTAAAGCAA ACCCGTCGTT ATGGCCCCTA TCAGAAGCAT
TATGTGCATA AGAATGGCCA GTTAGTGGCA GTGCGCCTTA ATGGTGCGTT AGTCACAGGC
GCCGATGGTG AGCAGCTTAT TCTCTTTATC GTTGAAGATA TTACCGAGCA GGAGCGCACC
GTTGCGCGGG TAAATCTATT GGCGCAGGTG TTCCAGCAAA GTGGAGAAGG CATCACTATT
ATGGATGCCA ACGACATTAT TGTGGATGTG AATACTGCGT TTTCTCAGAT AACCGGCTAT
TCACGAGAAG AAATCATTGG TAAAAACTGC CGCTTTTTAG AGGCCGAGCG TACCGACAAA
AATATCGACC CTCAAGTGCG TGCCGCCTTA GAACAAACGG GATTCTGGCA AGGCGAAGTT
TGGGACAGGC ATAAGCATGG CTACGATTTC CCCAAATGGT TGATGATGTC TGTGGTGCGC
GATGATGCAG GTGCCGTGAG CCATTACATC GGCAGCTTTA CCGATATCAG CGAGCGTAAA
GTCAGTGAAG AACGGATTCA TTTCCTCGCC CACCATGATT CTTTGACCTT ACTGCCTAAT
CGACTCAGCT TACAGTCGCG CCTCGAAGTG GTTTTCAGGG AGGCGCTGGC ATCCGACAGC
CAAATTGCCG TGATGTTTAT CGACATGGAC CACTTTAAAA ATATCAACGA CACCTTGGGC
CATCATGTGG GCGATCAACT CTTGTTAGAA GTTGCGCGGC GTTTGAAAAA CATCGTTGGT
GATACTGACA CTGTGGCACG TCTAGGTGGC GATGAGTTTG TGGTTGCCTT ATCTGATACG
AACCATGATG AGGTGGCCAG TTTAGCTGAA GCGCTGCGCA GTGGTTTGAG TCAAACCTAT
GTTATTAACA ATCAAGCATT ACATTCATCA CCGAGTATAG GCATCAGTTT ATTCCCGACC
GACGGCGACA GTGTTGAAGC CCTGATGAAA AACGCCGATA TGGCCATGTA CCGTGCCAAA
TCGGCGGGAC GCAATAACTA TCAATTCTTT ACTGCGGCGA TGAATACCTT GATCACTGAG
CGCCAGCAAA TTGAAACTGG CCTCAGGCAA GTGCTCGCTA ACGATGAATT ACGACTGCAT
TATCAGCCAC AAATTGATAT CCGTACTGGG CAAGTGGTCA GTGTCGAAGC CTTAGTGCGC
TGGCAACATC CCGAATTTGG CATGGTAGCG CCAGACCGCT TTATCCCCAT TGCTGAAGAG
ATCGACATGA TCATTCCTAT CGGCCAATGG GTGTTAGAAA CCGCGATGGC GCAGCTTGCC
GCTTGGCGCG CTGCGGGTGC GACCGAGCTG CGAATGGCGG TGAATCTGTC GGCGCATCAA
CTCCGCAAAG ATAGCATTGT CGCCGATATC ACCAATGTGC TTTTAAAGCA TAAGTTGGGC
AAAGGAGCAT TGGAGCTCGA AATCACTGAG AGTGTGGCAA TGCAATATCC TGAGCAGAAT
GCGCGCCTGT TAGCGGAATT GCGCCAGCAT GGTATCGAAC TTGCGATTGA TGATTTCGGT
ACGGGTTATT CCTCGTTATC CTATTTGAAA CTCTTGCCCT TAGACAGATT GAAGCTTGAC
CGCTCCTTTG TGAAGGATAT TGAGAGCGAC CCGAATGATG CTGCTATCAG TGCTGCGACC
ATTTCTATGT CCCATGAGTT GGGATTAACT GTGGTGGCCG AAGGGGTTGA AAACGAGGCG
CAGTTGGTAT TATTGTCGAG CATGGGGTGC GACTTAGTGC AAGGGTTTTA CTTTAGTAAA
CCCTTACCGG CAGAAGAGTG TTTCCGCTTT ATTCTGCGTA ATTTATAA
 
Protein sequence
MCQLEGLHIK SFIPYLKVNI FIALAYIVVG KLGLMIALPP GYSAAIWPAA GIAIAACILW 
KEYVPWVGVL IGSLLININI GGHIHWGWLP FAISIGSCIQ AVLSAHVLGR VDHLFTLDNP
NTVIKSCLSL ALTCIVATVF GNSALVINGT IPPSDLLGSL VNWWTGDLLG AVIFIPLTML
LFDKRTIWRA RRIQTGIPLL VGFLFCVGIY YYSDMNQRQQ LQDKFQIQSN AVISNIESFQ
EANLQQIVAL ASLFDNSEQV SEDEFVQFGK RNMLQQDGFR AWSWSPLVAA ADLPSFEAST
RSAIGGPYKV TRPQGWQTNT DGWLVPVMYI QPIIGNEAAL GLDLNSEPTR AAAIAKVRAT
LAPVMTAKIQ LAQDPNGPGG TLLIAPAFDR LGRISGFCSA VIDLQSIIND VESVKGLQWK
LSDMSAGGAL LYSNTTKSFP EFSNKLFSDK TGQYFQASLM LADRHWHIVI YQSYAVLMGD
TFSLSLLMLL LAFITCAVVG GMTLVSSGER QRIAEKVTEK TMALSKEIAR RQAFQATLVQ
SEQRYRNLFD KAPVGHVLKR LDDGQFVAIN PAFEAMTGYS LDELNQLDPW DLTPKRYQLS
ETEQLERLKQ TRRYGPYQKH YVHKNGQLVA VRLNGALVTG ADGEQLILFI VEDITEQERT
VARVNLLAQV FQQSGEGITI MDANDIIVDV NTAFSQITGY SREEIIGKNC RFLEAERTDK
NIDPQVRAAL EQTGFWQGEV WDRHKHGYDF PKWLMMSVVR DDAGAVSHYI GSFTDISERK
VSEERIHFLA HHDSLTLLPN RLSLQSRLEV VFREALASDS QIAVMFIDMD HFKNINDTLG
HHVGDQLLLE VARRLKNIVG DTDTVARLGG DEFVVALSDT NHDEVASLAE ALRSGLSQTY
VINNQALHSS PSIGISLFPT DGDSVEALMK NADMAMYRAK SAGRNNYQFF TAAMNTLITE
RQQIETGLRQ VLANDELRLH YQPQIDIRTG QVVSVEALVR WQHPEFGMVA PDRFIPIAEE
IDMIIPIGQW VLETAMAQLA AWRAAGATEL RMAVNLSAHQ LRKDSIVADI TNVLLKHKLG
KGALELEITE SVAMQYPEQN ARLLAELRQH GIELAIDDFG TGYSSLSYLK LLPLDRLKLD
RSFVKDIESD PNDAAISAAT ISMSHELGLT VVAEGVENEA QLVLLSSMGC DLVQGFYFSK
PLPAEECFRF ILRNL