Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_4348 |
Symbol | |
ID | 5756179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | - |
Start bp | 5138453 |
End bp | 5142100 |
Gene Length | 3648 bp |
Protein Length | 1215 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641290704 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
Protein accession | YP_001556766 |
Protein GI | 160877450 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGCCAGC TTGAAGGACT ACACATAAAG TCATTTATTC CATACCTTAA GGTAAATATT TTCATCGCCT TAGCTTACAT TGTTGTAGGT AAATTAGGCT TGATGATTGC TTTGCCGCCT GGATATTCTG CGGCGATTTG GCCTGCTGCA GGGATTGCTA TTGCCGCATG TATCCTATGG AAAGAGTATG TCCCTTGGGT TGGCGTGTTA ATTGGTTCGC TGCTGATTAA CATCAATATT GGCGGGCATA TCCATTGGGG CTGGTTACCC TTTGCTATCT CTATTGGGTC TTGTATACAG GCTGTGCTTT CTGCTCATGT TCTTGGCCGA GTCGATCATT TATTCACCTT AGATAATCCT AATACCGTTA TTAAATCCTG CTTGAGCTTA GCCTTAACTT GTATTGTGGC GACCGTTTTT GGCAACAGTG CCTTAGTGAT CAACGGTACG ATTCCACCAT CTGATTTATT GGGAAGTTTA GTGAATTGGT GGACGGGGGA TTTACTCGGC GCCGTGATCT TTATCCCTTT GACTATGTTG CTATTTGATA AGCGGACTAT CTGGCGTGCT CGCCGCATTC AGACGGGCAT TCCTTTGCTG GTGGGCTTTT TATTCTGCGT GGGGATTTAT TACTACTCGG ATATGAACCA GCGCCAACAG TTGCAGGATA AGTTTCAGAT CCAATCCAAT GCCGTGATTA GCAATATTGA AAGTTTTCAA GAGGCTAACC TGCAGCAAAT CGTCGCCCTA GCGAGCTTAT TCGATAATAG CGAGCAGGTT TCTGAGGATG AGTTTGTGCA ATTTGGCAAA CGTAACATGC TGCAGCAAGA TGGCTTTAGA GCTTGGTCTT GGTCGCCGTT AGTGGCGGCC GCCGATCTGC CCAGTTTTGA GGCATCGACC CGCTCAGCCA TTGGCGGCCC TTACAAAGTC ACGCGGCCTC AAGGCTGGCA AACTAATACC GATGGCTGGT TAGTGCCTGT GATGTACATT CAGCCAATCA TAGGCAATGA GGCGGCGCTG GGATTAGATC TCAATAGCGA GCCGACACGA GCCGCTGCCA TTGCCAAAGT GCGCGCGACC TTAGCGCCTG TGATGACGGC TAAGATTCAA TTAGCTCAAG ATCCCAATGG CCCGGGTGGT ACTTTACTCA TTGCGCCCGC GTTCGACCGA CTAGGCAGAA TCTCAGGATT TTGTTCAGCT GTGATTGATT TGCAAAGCAT TATTAATGAT GTTGAGAGCG TGAAGGGATT GCAGTGGAAA CTCTCCGACA TGAGTGCGGG CGGTGCATTA CTTTATAGCA ATACCACGAA GTCGTTTCCC GAGTTTAGCA ACAAGCTATT TAGCGATAAA ACCGGCCAGT ATTTTCAGGC AAGCCTGATG CTAGCGGATC GGCATTGGCA CATAGTGATT TATCAATCCT ATGCTGTGCT GATGGGCGAT ACTTTTAGCT TATCGCTACT TATGCTGCTC CTCGCCTTTA TCACCTGTGC TGTTGTGGGG GGTATGACGC TGGTTTCCTC CGGCGAGCGC CAACGTATTG CCGAGAAAGT GACTGAAAAA ACCATGGCCT TGTCGAAGGA AATTGCCCGC CGTCAGGCTT TTCAGGCCAC CTTGGTACAA AGCGAGCAAA GATATCGTAA TTTGTTTGAT AAGGCGCCCG TGGGGCATGT GCTTAAACGT TTAGATGATG GTCAGTTTGT GGCGATTAAC CCCGCATTCG AAGCCATGAC GGGTTACTCA CTCGATGAGT TAAATCAGCT TGACCCTTGG GATCTCACGC CAAAGCGTTA TCAATTAAGT GAAACTGAGC AATTAGAACG CCTAAAGCAA ACCCGTCGTT ATGGCCCCTA TCAGAAGCAT TATGTGCATA AGAATGGCCA GTTAGTGGCA GTGCGCCTTA ATGGTGCGTT AGTCACAGGC GCCGATGGTG AGCAGCTTAT TCTCTTTATC GTTGAAGATA TTACCGAGCA GGAGCGCACC GTTGCGCGGG TAAATCTATT GGCGCAGGTG TTCCAGCAAA GTGGAGAAGG CATCACTATT ATGGATGCCA ACGACATTAT TGTGGATGTG AATACTGCGT TTTCTCAGAT AACCGGCTAT TCACGAGAAG AAATCATTGG TAAAAACTGC CGCTTTTTAG AGGCCGAGCG TACCGACAAA AATATCGACC CTCAAGTGCG TGCCGCCTTA GAACAAACGG GATTCTGGCA AGGCGAAGTT TGGGACAGGC ATAAGCATGG CTACGATTTC CCCAAATGGT TGATGATGTC TGTGGTGCGC GATGATGCAG GTGCCGTGAG CCATTACATC GGCAGCTTTA CCGATATCAG CGAGCGTAAA GTCAGTGAAG AACGGATTCA TTTCCTCGCC CACCATGATT CTTTGACCTT ACTGCCTAAT CGACTCAGCT TACAGTCGCG CCTCGAAGTG GTTTTCAGGG AGGCGCTGGC ATCCGACAGC CAAATTGCCG TGATGTTTAT CGACATGGAC CACTTTAAAA ATATCAACGA CACCTTGGGC CATCATGTGG GCGATCAACT CTTGTTAGAA GTTGCGCGGC GTTTGAAAAA CATCGTTGGT GATACTGACA CTGTGGCACG TCTAGGTGGC GATGAGTTTG TGGTTGCCTT ATCTGATACG AACCATGATG AGGTGGCCAG TTTAGCTGAA GCGCTGCGCA GTGGTTTGAG TCAAACCTAT GTTATTAACA ATCAAGCATT ACATTCATCA CCGAGTATAG GCATCAGTTT ATTCCCGACC GACGGCGACA GTGTTGAAGC CCTGATGAAA AACGCCGATA TGGCCATGTA CCGTGCCAAA TCGGCGGGAC GCAATAACTA TCAATTCTTT ACTGCGGCGA TGAATACCTT GATCACTGAG CGCCAGCAAA TTGAAACTGG CCTCAGGCAA GTGCTCGCTA ACGATGAATT ACGACTGCAT TATCAGCCAC AAATTGATAT CCGTACTGGG CAAGTGGTCA GTGTCGAAGC CTTAGTGCGC TGGCAACATC CCGAATTTGG CATGGTAGCG CCAGACCGCT TTATCCCCAT TGCTGAAGAG ATCGACATGA TCATTCCTAT CGGCCAATGG GTGTTAGAAA CCGCGATGGC GCAGCTTGCC GCTTGGCGCG CTGCGGGTGC GACCGAGCTG CGAATGGCGG TGAATCTGTC GGCGCATCAA CTCCGCAAAG ATAGCATTGT CGCCGATATC ACCAATGTGC TTTTAAAGCA TAAGTTGGGC AAAGGAGCAT TGGAGCTCGA AATCACTGAG AGTGTGGCAA TGCAATATCC TGAGCAGAAT GCGCGCCTGT TAGCGGAATT GCGCCAGCAT GGTATCGAAC TTGCGATTGA TGATTTCGGT ACGGGTTATT CCTCGTTATC CTATTTGAAA CTCTTGCCCT TAGACAGATT GAAGCTTGAC CGCTCCTTTG TGAAGGATAT TGAGAGCGAC CCGAATGATG CTGCTATCAG TGCTGCGACC ATTTCTATGT CCCATGAGTT GGGATTAACT GTGGTGGCCG AAGGGGTTGA AAACGAGGCG CAGTTGGTAT TATTGTCGAG CATGGGGTGC GACTTAGTGC AAGGGTTTTA CTTTAGTAAA CCCTTACCGG CAGAAGAGTG TTTCCGCTTT ATTCTGCGTA ATTTATAA
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Protein sequence | MCQLEGLHIK SFIPYLKVNI FIALAYIVVG KLGLMIALPP GYSAAIWPAA GIAIAACILW KEYVPWVGVL IGSLLININI GGHIHWGWLP FAISIGSCIQ AVLSAHVLGR VDHLFTLDNP NTVIKSCLSL ALTCIVATVF GNSALVINGT IPPSDLLGSL VNWWTGDLLG AVIFIPLTML LFDKRTIWRA RRIQTGIPLL VGFLFCVGIY YYSDMNQRQQ LQDKFQIQSN AVISNIESFQ EANLQQIVAL ASLFDNSEQV SEDEFVQFGK RNMLQQDGFR AWSWSPLVAA ADLPSFEAST RSAIGGPYKV TRPQGWQTNT DGWLVPVMYI QPIIGNEAAL GLDLNSEPTR AAAIAKVRAT LAPVMTAKIQ LAQDPNGPGG TLLIAPAFDR LGRISGFCSA VIDLQSIIND VESVKGLQWK LSDMSAGGAL LYSNTTKSFP EFSNKLFSDK TGQYFQASLM LADRHWHIVI YQSYAVLMGD TFSLSLLMLL LAFITCAVVG GMTLVSSGER QRIAEKVTEK TMALSKEIAR RQAFQATLVQ SEQRYRNLFD KAPVGHVLKR LDDGQFVAIN PAFEAMTGYS LDELNQLDPW DLTPKRYQLS ETEQLERLKQ TRRYGPYQKH YVHKNGQLVA VRLNGALVTG ADGEQLILFI VEDITEQERT VARVNLLAQV FQQSGEGITI MDANDIIVDV NTAFSQITGY SREEIIGKNC RFLEAERTDK NIDPQVRAAL EQTGFWQGEV WDRHKHGYDF PKWLMMSVVR DDAGAVSHYI GSFTDISERK VSEERIHFLA HHDSLTLLPN RLSLQSRLEV VFREALASDS QIAVMFIDMD HFKNINDTLG HHVGDQLLLE VARRLKNIVG DTDTVARLGG DEFVVALSDT NHDEVASLAE ALRSGLSQTY VINNQALHSS PSIGISLFPT DGDSVEALMK NADMAMYRAK SAGRNNYQFF TAAMNTLITE RQQIETGLRQ VLANDELRLH YQPQIDIRTG QVVSVEALVR WQHPEFGMVA PDRFIPIAEE IDMIIPIGQW VLETAMAQLA AWRAAGATEL RMAVNLSAHQ LRKDSIVADI TNVLLKHKLG KGALELEITE SVAMQYPEQN ARLLAELRQH GIELAIDDFG TGYSSLSYLK LLPLDRLKLD RSFVKDIESD PNDAAISAAT ISMSHELGLT VVAEGVENEA QLVLLSSMGC DLVQGFYFSK PLPAEECFRF ILRNL
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