| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4322 |
|---|
| Symbol | |
|---|
| ID | 5756153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 5103904 |
|---|
| End bp | 5105271 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641290678 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001556740 |
|---|
| Protein GI | 160877424 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTG CTAAATCAAC TTGGCTCGAC CTAATGCTTA ACGGCGCGAA AAATCGTCAA
TTACTGGCGC TTGCCCTGCC GATGATACTC TCCAATATCA CTATCCCACT TTTGGGCTTA
GTCGATACGG CTGTCATAGG TCATCTGAGT GAAGCCTATT ATTTAGGGGG AGTCGCTGTC
GGGTCAACGA TTATCACATT AATCATTTGG TTATTGGGAT TTTTGCGTAT GGCGACCACA
GGTTTAGTCG CGCAGGCCTA TGGTGCAAAT GATCTTCACG CCCAGCATAA ACTCTTAGTC
CAAGGCGCTA TGCTAGCTGT GTTATTGGGC GCTGGCGTTA TCGCGCTGCA AGTCCCGATA
TTAAATTTAG CGCTAGGATT ATCCGAAGCG AGTAGCGAAG TCGAGCGCTA TTGCCGCGAG
TATTTTCAGG TACGAATTTG GTCAACGCCC TTCGCCCTAC TCAACCTCGT AATGCTTGGC
TGGCTATTGG GACGTCAGCA ACCTAAAGCC GCCATGTGGC AGCTGATATT AGCCAACCTT
GCCAATATTA TTCTCGATGT GGTGTTTGTC CTCGGCTTAG GCTGGGGCGT TAAGGGCGCC
GCCCTCGCCT CAGTCTTTGC CGATATCACC GCTTTCTCAG TCGCACTCAC TATGGTGTTA
CAGCAACTCA AGCGCGAAGC CGATTTTCAC TTATCCCAGC TATTACCCCA TGTCACCCTG
ACAGGGTATG GCAAATTACT GAGGCTCAAC ACAGATATTT TTATCCGTAG CCTCTGCCTG
CAAGCGGCCT TTGCCTTTAT GACTTTTCAT GGTGCTGGTC TGGGTGATAA TACCGTTGCC
GCCAATGCCG TGTTACTGAA TTTACTGCTG TTAATCTCCT ATGCACTCGA TGGCATTGCC
TATTATGCCG AGGCAGAAGT CGGCCGAGCC TATGGCCAAA AACAGGCGGA GCAATTACGG
GAAGCAGTGA TCTTAGCCTG GAGCTGGTCG GCCATTACTG CGTTAGGGTT CTGCGCTGTA
TTCAGTCTTT TTGGCAGTAA TATTATCGCG TTACTGACCA GCATTAATGA GGTCAGAGCC
ACAGCACAGA CCTATCTTAT CTGGCTGATA TTTTTGCCTT TATGGTCTTT TAGCTCGTAT
TTATTCGACG GGGTTTATAT CGGTGCAGCT AAAGGCAAAG TGATGCGCAA TAGCATGATA
CTCGCCACCT TCGGTGCATT TTTCCCGACA TGGTATTTGC TGCAGCAACT GTTATTGCCT
GAGCAAGGTA ACCACGCCCT TTGGGCCGCC ATGAGTGTCT TTATGATCGC CAGAAGCCTA
ACGCTTGCGG GGCACTATTA TTTCAGCAAA GACTTTTTGA ATAAATAA
|
|---|
| Protein sequence | MNTAKSTWLD LMLNGAKNRQ LLALALPMIL SNITIPLLGL VDTAVIGHLS EAYYLGGVAV
GSTIITLIIW LLGFLRMATT GLVAQAYGAN DLHAQHKLLV QGAMLAVLLG AGVIALQVPI
LNLALGLSEA SSEVERYCRE YFQVRIWSTP FALLNLVMLG WLLGRQQPKA AMWQLILANL
ANIILDVVFV LGLGWGVKGA ALASVFADIT AFSVALTMVL QQLKREADFH LSQLLPHVTL
TGYGKLLRLN TDIFIRSLCL QAAFAFMTFH GAGLGDNTVA ANAVLLNLLL LISYALDGIA
YYAEAEVGRA YGQKQAEQLR EAVILAWSWS AITALGFCAV FSLFGSNIIA LLTSINEVRA
TAQTYLIWLI FLPLWSFSSY LFDGVYIGAA KGKVMRNSMI LATFGAFFPT WYLLQQLLLP
EQGNHALWAA MSVFMIARSL TLAGHYYFSK DFLNK
|
|---|
| |