Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_4133 |
Symbol | |
ID | 5755960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | - |
Start bp | 4892473 |
End bp | 4894290 |
Gene Length | 1818 bp |
Protein Length | 605 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641290486 |
Product | diguanylate cyclase |
Protein accession | YP_001556552 |
Protein GI | 160877236 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGCATC GAAATCATTC TATTAGTCAT AAGATGACGC TGACCATTAT CGGGGTGAGC TCATTTTTTG CTGTGTTAAC TATGCTGGTG CAGCTGATTT GGAACTATCA GGATAGTATC GACAATGCCA CGTCGGATAT CCGCGAATAT TCAGAATCTA TTCTGCCGAG CGTGGCGAAG TCGCTGTGGG ACGTTGACCG CAGCCTGCTA TCTGATTTGC TCTCTGGTTT AGGGATGATG CCGTTAGTGT CGAGTGTGCA TTTAGACAGT ATCGACGGCG TCACTATGCA GCTGGGTAAA CCGCTGTTAA CCGACGACGA GTCGCAAACC CTGTTTCATT ATCCTGTGAC TTATCAAGAT CAGCTGATCG CAACTTTAAC CGTAGGCTTA GATACTAACC AGCTTTACTA CGAGCTGTGG CGACAGTTGA TTTTTATTGT GCTCGGCAAT GGCTTAAAGA CCCTGCTGAT GATCTATTTG ATCTTGACCT TAGTGCGACT CATGGTGACG GATAGATTGT CGGCATTGGA AGATTTTACT AATAAAATCA ATCTAAAATC GCTAAAAAAG TTATCTGTGC CCGAGACGGT GACCGCCAGT CCTGACGAGA TTGCCCATGT GGCATTGTCG CTTAAGGCCA TGTATCAAAG GATACGCAAC GACCTCGCTA TCAATAAACG CCATCAACGT GCGTTACAGC AACAGCAGCA TTTATTGTCG GACTTAGTGA AAGAGCGGAC CAAAGAACTG GACTGGCAGT CGCAGTCGAA TCAATTACTG GCAGAGATTT CGCTGCAATT TTTGAGTATC GACACCTGCA ATGTAGACAA AACCTTAACT GAGGTGTGCC ACAAAATAGG TCAGTTGTTT GATGTTGAAA GGGTGAGTAT TCTCGAATTT CATCAACAGC ATGCCTATTA CCGCAGTTTT TGGACCAGCG AGTTACATGC TAACAAGGTC CAAGGGATTT CGGTGGACAA CATTACTCAG CTTGCTAAAA AATTCGAAAC AGAATCGACT TTAGTGATTG AGGATCTTGA GGCGTTAAAG GACTTTTCAC CGCAGGAATA TGAAGTGATG AAATCCGTGG GCATTTGCTC TATTGCTGCC TTTGCGATTA AAAATGCCGG AGAGTTATTG GGATTACTCT CGCTGTCGAC GGTGTCGCGG CCCTTGAATT GGAACGCCCA GAAAAAGAAT ATGCTGACTC AGTTTGCCTC CGCATTGAAC GAGTTACTGT TGCGCGAGCA GAAAGAGCGG CAGATGATAG TGCTGCAACA AGCGCTGGTT TCTGCCAATA CTCAATTGAA AGAAATGGCC GAAACCGATG AGTTAACGGG CCTAGCCAAT AGACGCCCCT TTACCGAAAG ATTAGAAACT GTACTACAGG CGGATATCCC TGCGGGACTG TTTATGTTGG ACGTCGATTA TTTCAAATCC TACAACGACA CTTACGGTCA TCTCGAAGGC GATGTAGTGC TTAAGCGTGT GGCAGATGCC TTAGCGCAGT GCGATATCCT GCCGCACAAT GCTTTGTTGG CGCGCATCGG TGGCGAAGAG TTTGCCTTAG TTGTTGAGCA TGTCACGCCT GCACAGTTAA CGGCCATTGC CACGCAGTTG TGTTATCTCG TCGAGCAACT CAATATACCC CATCAAGCAT CGCCGTTGGC TGTGGTGACC ATCAGTATTG GCAGCGTGTT TTTGCCATTA GATAAGGTCT CGGGGCTTAA GATGGCCGAC GTGTTACGCC GCGCCGATGT TTGCCTTTAT CGCGCTAAGG ATAAAGGTCG CAATAGAGTC GAGGTTGAAG TGATTTAA
|
Protein sequence | MKHRNHSISH KMTLTIIGVS SFFAVLTMLV QLIWNYQDSI DNATSDIREY SESILPSVAK SLWDVDRSLL SDLLSGLGMM PLVSSVHLDS IDGVTMQLGK PLLTDDESQT LFHYPVTYQD QLIATLTVGL DTNQLYYELW RQLIFIVLGN GLKTLLMIYL ILTLVRLMVT DRLSALEDFT NKINLKSLKK LSVPETVTAS PDEIAHVALS LKAMYQRIRN DLAINKRHQR ALQQQQHLLS DLVKERTKEL DWQSQSNQLL AEISLQFLSI DTCNVDKTLT EVCHKIGQLF DVERVSILEF HQQHAYYRSF WTSELHANKV QGISVDNITQ LAKKFETEST LVIEDLEALK DFSPQEYEVM KSVGICSIAA FAIKNAGELL GLLSLSTVSR PLNWNAQKKN MLTQFASALN ELLLREQKER QMIVLQQALV SANTQLKEMA ETDELTGLAN RRPFTERLET VLQADIPAGL FMLDVDYFKS YNDTYGHLEG DVVLKRVADA LAQCDILPHN ALLARIGGEE FALVVEHVTP AQLTAIATQL CYLVEQLNIP HQASPLAVVT ISIGSVFLPL DKVSGLKMAD VLRRADVCLY RAKDKGRNRV EVEVI
|
| |