| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4090 |
|---|
| Symbol | |
|---|
| ID | 5755913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 4822794 |
|---|
| End bp | 4824038 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641290440 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_001556510 |
|---|
| Protein GI | 160877194 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0466551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATCACT TTCTCTACCA ACAAAATGCC CTGCACGCCG AAGGCTGCCA GGTTGCCGAT
TTAGCTCAAA CCTATGGCAC ACCGCTGTAT ATCTATTCCC GCGCCACGCT AGAGCGCCAT
TGGCATGCTT TTAATAATGC CGTGGCAGAT CATCCACATT TGATTTGTTA CGCGGTTAAA
GCCAATGCGA ACTTGGCTGT ACTGAATGTG CTGGCACGTT TAGGCAGTGG TTTTGATATC
GTGTCGGGCG GTGAGTTAGC AAGAGTGATG GAAGCGGGCG GCGATCCCGC CAAAGTGGTG
TTCTCTGGCG TGGGTAAAAC TGCGGCTGAA ATGGAACAGG CACTTAATCT GGGCATTTAT
TGCTTTAACG TTGAATCGAG CGCTGAGCTT GAGCTGTTAA ATCTGGTCGC AGGTCGTTTA
GGTAAAGTCG CGCCTGTGTC CCTGCGGATT AATCCCGATG TGGATGCGGG AACTCATCCC
TACATTTCGA CTGGCCTTAA AGAAAACAAA TTCGGTATTG CTATGGATGA GGCTGAAATC
GTTTTCGCCC GTGCCCATGC GTTGCCACAT TTAAAAGTGA AAGGTGTCGA TTGCCATATC
GGCTCACAAC TGACTGAAAT CAAACCATTC CTCGATGCGA TGGATCGTAT GCTTGCGTTA
ATCGACCGTT TGGCCGAGCA GGGTATTGTT ATTGAGCATT TCGATGTGGG TGGTGGTTTA
GGGGTGACCT ATGATGCCGA AACGCCGCCG CATCCTGATG TGTATGCCGC CGCCATATTG
GCGCGTTTGG GCGACCGTCA ACTGAAGCTA ATCTTCGAGC CGGGCCGTGC GATTGCCGCC
AATGCGGGGA TTTTTGTTAC TCAAGTGCTG TATCTTAAAG AAAACAGCGA CAAACGTTTT
GCGATTGTCG ATGGCGCGAT GAATGACTTG ATTCGTCCCG CACTCTACAG TGCATGGCAA
AATATTATCC CAGTCGTGCC AAGGGACTCA GAGGCCTATG AGTTTGATAT TGTTGGCCCA
GTGTGCGAAA CCGGTGACTT TTTAGGTAAA AATCGCCAGC TCGCGTTAGC CGCGGGTGAT
TTACTGGCGG TGCGTTCGAG TGGTGCCTAT GGTTTTGCCA TGGCCTCTAA CTACAACACG
CGTCCTCGTG CGGCTGAAGT TATGGTGGAT GGTGAGCAGG CTTTCTTAGT GCGTGAGCGA
GAAAAATTGT CTCAGCTCTG GCAAGGTGAG CAACTCCTGC CGTAA
|
|---|
| Protein sequence | MDHFLYQQNA LHAEGCQVAD LAQTYGTPLY IYSRATLERH WHAFNNAVAD HPHLICYAVK
ANANLAVLNV LARLGSGFDI VSGGELARVM EAGGDPAKVV FSGVGKTAAE MEQALNLGIY
CFNVESSAEL ELLNLVAGRL GKVAPVSLRI NPDVDAGTHP YISTGLKENK FGIAMDEAEI
VFARAHALPH LKVKGVDCHI GSQLTEIKPF LDAMDRMLAL IDRLAEQGIV IEHFDVGGGL
GVTYDAETPP HPDVYAAAIL ARLGDRQLKL IFEPGRAIAA NAGIFVTQVL YLKENSDKRF
AIVDGAMNDL IRPALYSAWQ NIIPVVPRDS EAYEFDIVGP VCETGDFLGK NRQLALAAGD
LLAVRSSGAY GFAMASNYNT RPRAAEVMVD GEQAFLVRER EKLSQLWQGE QLLP
|
|---|
| |