| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4089 |
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| Symbol | dapF |
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| ID | 5755912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | - |
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| Start bp | 4821891 |
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| End bp | 4822718 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641290439 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001556509 |
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| Protein GI | 160877193 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0401553 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTGGT CGATGGGGTC
ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGT
ATAGGTTTCG ACCAACTACT CTTAGTTGAG CCGCCTTATG ATCCCGATTT AGATTTTCAT
TATCGCATCT TCAATGCCGA TGGCACTGAA GTAGAACAAT GCGGTAATGG CGCCCGCTGT
TTCGCCCGTT TTGTGCGTAA TAAAGGCCTG ACTAACAAGA GCAAAATCCG TGTCAGCACC
TCATCGGGCA AGATGACTCT GCGCTTAGAG CGAGACGGTA CTGTTACCGT AAATATGGGC
GTGCCGATCC TCGAACCGAG TCAGATCCCC TTCAAAGCCA AGAAACCTGA AAAAACCTAT
TTACTGCAAA CACCGATGCA AACCTTTTTG TGTGGCGCGG CTTCTATGGG TAATCCCCAT
TGCGTGCTCG ACGTTGAAGA TGTGGCGAGC GCTTCTGTCG CTGAAATTGG TGCCATGCTC
ACTAAGCATG AGCGTTTTCC ACGCGGTGTG AATGTGGGAT TTATGCAGGT CGTAGACTCC
GGCCACATTA AGCTGCGGGT GTATGAGCGC GGCGCGGCCG AGACCTTGGC CTGTGGCACA
GGCGCATGTG CAGCTGTAGT TGTAGGTCAA GTGCAAGGAA AGCTCGGCCA GCAAGTGCGG
GTGGATTTAC CCGGCGGCAC CTTAACCATC AACTGGGAAG GCGAGGGTAA ACCTTTGTGG
ATGACGGGCC CTGCGCAGCA CGTTTACGAT GGACAAATTC AGTTATGA
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| Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH
YRIFNADGTE VEQCGNGARC FARFVRNKGL TNKSKIRVST SSGKMTLRLE RDGTVTVNMG
VPILEPSQIP FKAKKPEKTY LLQTPMQTFL CGAASMGNPH CVLDVEDVAS ASVAEIGAML
TKHERFPRGV NVGFMQVVDS GHIKLRVYER GAAETLACGT GACAAVVVGQ VQGKLGQQVR
VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
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