| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_4041 |
|---|
| Symbol | |
|---|
| ID | 5755860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 4755388 |
|---|
| End bp | 4757967 |
|---|
| Gene Length | 2580 bp |
|---|
| Protein Length | 859 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641290387 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001556461 |
|---|
| Protein GI | 160877145 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACATTG GCAAGAAAAT AATGGTATTT ATTGCGGGAT TTTGTCTCCC CGCGGTAGTA
ATTGTCTCCT ATTGTCTTGG GTGTTGGTAC GACCATCGCG TCGAGCTATT GCGCCAAGAC
AGCGCTAACC GTGAGCTTGC TAATATCCAG CAGCAGTTTC AAATTGATGT CGACCGCTTA
ACCTTTCTCA CGAATATCTA CGCTTTACCT TTGTCGCAGT TAGATGAAGA GCAACTTAAG
AAACTAGAAT CCTCGTGGCA CGACAGTTCT ATGTCGGCCA ACCTCAGTTG GTATATTTTA
CGCCAAGGCG AGCTGCACAC TTTTTTCCCC AATTCACATC CTTTTGCCTC TGATAAGTTG
CATGAAATCG CCAGCGCTAT CATCAATGCT AATAAACCCA GTGTGGCAGG CGCTTATTTG
ATTGGTGAGC AGACTTATGT CATCACCGCC GCGGCTTCTG CGCCTAATGA GTCTGTGCTG
CTAGTGCGCC AGTTGACCAA TAATGACTTG CTGGAATATG CGCAGGCCTT ATTGGTGACT
AAAGTGACTA TGAGTCATTC TAACGCTGTC ACGGCAAGTG TTGAGGACGT TCATAGTGAC
ACCATTGAAA TACCCAGCCT GTTAAAAGAC AAACCTGTTT ACCTGCAAGT GCAGTTCTCC
GAGGGGCCCT TCCAAGAGGT GAAGTTTAAG CTCGATTGGG TATCGCTCGG TTTTATTCTT
TTTGGCGTAT TTATTGTTGG CCTTGGCTAT ATTTGGCTGC GTTCTGGTTT ACTCAAACCC
TTTAAAAACT TGATGCGACA ATTGGCGCTG GTCGATCCTA TGTCCAGTGT CTATCAACCT
GTCACCAGTG AGGGTAATGA GGAATTAGAA GTGCTTGCCA GCCGCGTTAA TAGCTTGCTG
GCCAGAATTT ATCAGCAGAA AGAGCGCGCG AAAATCACCT TAGAATCCAT TGCAGAAGCC
GTGATTTTAA CCGATGTCGA TGCCAAAGTG ATTTATATGA ATCCGCGGGC CGAGTCGCTT
CTGGATGTCG CCAGTTGTTA TGCCCTAGAT CAGAGCCTCG CGAGCCTGTT AAAGGCTGGC
GATCAGTTAA ATCAGGCGGT CTTCACTTGT ATTCGTCTTG GCGAGTCATC ACCACAGGTC
GAGAAAATCA AGCTATTAAC TGCTTCGCCT CGGATTATGG AGCGCAGTAT CAGCAATCTG
CGCAATCACG ATAAAGAAAT TGTTGGTACT GTCGTGGTAT TGCGGGATAT CACTCAAGAA
GAGTTACTTA AACACCAGCT ACAAAAAAGG GCAAATTTCG ATAGCATTAC AGGGCTGCTA
AACCGTCAGG CATTTGATGA GCAGTTACCC CAATTTGCCG CTTCAGCTAA AACCATCGCC
GTTTGTTATC TCGATTTAGA GCAATTCAAG TTGATTAACG ACAGCTGTGG CCATACTGCA
GGCGATCGTA TGCTCGCTAT GGTGGCTAAG GCTATGCAGG CTTGTCTTGG GCCACAGGAG
CAGTTGGCGC GCCTTGGTGG CGATGAGTTC GGTTTAGTGA TTTGTAATCG CAGTGCTTTA
TCTGTGGCGC AATTACTCAA ACAAATGATC GCACAAGTCT CGCTGCAAGT GCTGAATGAC
AAAAACTGTA ACTATAAAGT CGGCCTCAGC ATAGGTGTCG CCTTTGGTCG AGCCCCCTAT
ATTGATGCAC AAGAATTATT GAAAGACGCG GATATTGCCT GCATTGCCGC TAAAGCTAAG
GGTGCCAATC AAATTCATTT TTACGATGAT AAAGATAAAG AGCTCACTTA CCAAAGAAAC
GCGCCTAAGT GGGCGGTACG TATTGCGCAG GCGATTGAAG AAAACGAGCT AATTCTGTAT
TACCAACCGA TCCGTGGGTT AGGCAGTGGT CCGCAGCGAC AACGCATGGA AATCCTGCTG
CGAATTCAAG AACCCTGTGG CCGTATTTTG GCGCCTGCGC AGTTTATTGC CGCGGCTGAA
CGCTTTAAGC TGATGCCTGA CATAGATAAA GAAGTGATCC GCAAAGCCTT TTTATGGTTG
TCTTTGCATC CGGTACTTTG GCCTGATCAC TGTATTTCGA TCAACCTTTC GGGCAATAGT
TTAGGCGCCG AAGGTATGGT GGAATATATC GCCCAGCAGC AGCATATTTT TGATATTCCA
AGTCAATGTA TTTGCTTTGA AATTACTGAA ACCACCGCGA TCCAAAATCG CAATCGTGGT
ATGGAAATGT TGAAGCAGTT ACGTAAGCTC GGTTTCTCGT TTGCCTTGGA TGATTTTGGC
AGTGGTTTCG CCTCTTACGG CTATCTGCGT GAATTACCTG TCGATTATGT CAAAATCGAT
GGCTGTTTTA TTAAGAATCT TGCCGTGAAC GCCAAAGACT ACGCCATCGT TAAATCGATT
CAGGATGTTT GTCGGGTTAT GGGGATCGAG ACCGTGGCCG AATTTGTTGA AAATCAGGAT
ATTATCGACA GATTATTGAG CATCGGCATT AACTACGCGC AAGGTTATGC AATAGGGCGC
CCACAACCCT TAGCTAATTA TCGTGAACAA TATGAGATGA GGCTTGCACA ACGTGCGTGA
|
|---|
| Protein sequence | MHIGKKIMVF IAGFCLPAVV IVSYCLGCWY DHRVELLRQD SANRELANIQ QQFQIDVDRL
TFLTNIYALP LSQLDEEQLK KLESSWHDSS MSANLSWYIL RQGELHTFFP NSHPFASDKL
HEIASAIINA NKPSVAGAYL IGEQTYVITA AASAPNESVL LVRQLTNNDL LEYAQALLVT
KVTMSHSNAV TASVEDVHSD TIEIPSLLKD KPVYLQVQFS EGPFQEVKFK LDWVSLGFIL
FGVFIVGLGY IWLRSGLLKP FKNLMRQLAL VDPMSSVYQP VTSEGNEELE VLASRVNSLL
ARIYQQKERA KITLESIAEA VILTDVDAKV IYMNPRAESL LDVASCYALD QSLASLLKAG
DQLNQAVFTC IRLGESSPQV EKIKLLTASP RIMERSISNL RNHDKEIVGT VVVLRDITQE
ELLKHQLQKR ANFDSITGLL NRQAFDEQLP QFAASAKTIA VCYLDLEQFK LINDSCGHTA
GDRMLAMVAK AMQACLGPQE QLARLGGDEF GLVICNRSAL SVAQLLKQMI AQVSLQVLND
KNCNYKVGLS IGVAFGRAPY IDAQELLKDA DIACIAAKAK GANQIHFYDD KDKELTYQRN
APKWAVRIAQ AIEENELILY YQPIRGLGSG PQRQRMEILL RIQEPCGRIL APAQFIAAAE
RFKLMPDIDK EVIRKAFLWL SLHPVLWPDH CISINLSGNS LGAEGMVEYI AQQQHIFDIP
SQCICFEITE TTAIQNRNRG MEMLKQLRKL GFSFALDDFG SGFASYGYLR ELPVDYVKID
GCFIKNLAVN AKDYAIVKSI QDVCRVMGIE TVAEFVENQD IIDRLLSIGI NYAQGYAIGR
PQPLANYREQ YEMRLAQRA
|
|---|
| |