| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3974 |
|---|
| Symbol | |
|---|
| ID | 5755793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 4680085 |
|---|
| End bp | 4681407 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641290320 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001556394 |
|---|
| Protein GI | 160877078 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAC ATAATCACTT TAACGCTACT AAGTCTTATC CAGTTGCAAT GTCAGACACT
GCTGCACCTG ACATCATTAC GTCTCAAATC ACAGCACCTG AAATCATTGC GCCTCAAATT
ACAGTACCTG CAAAGCGGCA GTTCACGTTG TCGACACTCG CCCTCGCATT ATGTGTGCTC
GGCTCTGCTG CGCTTTTCAC CGCCCAACCT TCATGGGCAG GGGACGATCA CGGTTCAGCT
ACTCAAACTG AGCAAGCGGA TGAACACGGT GCACAGGCGC TTAAGTTGAC CCAAGTGCAG
CAAGCTTTGG CGGGCATTAG CTTGTTACCC CTGTCGAGCG ATAGCTTGAA TATCGCCAAT
TTGAATCTGG ATATCAGGGC GACGGCCACC TTAGTGGTGG ATCGCGATAG AACTGCCACC
CTTGCGCCAC AGCTCGATGC GCGCGTGTTG GCGCGTCATG TGGTGCCGGG ACAAGAAGTC
AAAAAAGGTG AGCCTTTACT GACCTTGGGC GGCGCAGCCG TTGCGCAGGC ACAGGCGGAT
TACATCAATG CCGCCGCCGA ATGGAGCCGA GTCAAACGCA TGAGCGAAGG CGCCGTGAGT
GTCAGCCGCC GTATGCAGGC GCAGGTGGAT GCCGAACTTA AACGGGCGAT TTTAGAGGCG
ATTAAGATGA CGCCAACACA AATTCGCGCT CTGGAATCGA CGCCCGAAGC CATCGGCAGT
TATCAACTTT TAGCGCCGAT TGACGGACGA GTGCAGCAAG ATATCGCCAT GTTAGGCCAA
GTATTTAGTG CGGGCACGCC GTTAATGCAG CTGACCGACG AGTCTTATTT ATGGGTCGAG
GCGCAGCTAA CGCCTACCCA AACTGCGCAT ATCACTGTCG GCAGTGCGGC CTTAGTGCAA
GTGGGGGATA AAACGCTGGC GGGCAAGATC ATAGGCCGCT CCCATGAGCT CGATAGCGTG
ACGCGCACCG AGCAAGTTCT GGTGAGTATG CCTAATCCTG ATCATGTGCT GCATGCGGGG
CAATTTGCCG AACTCTACTT TGCCAATACT GTCGCCAACT CTGCTGATAA GGCTGGTGGA
ATCGTGCTGC CCGATGCGGC GCTCACCCGC AGCGGCGATG GCGACTGGCA GATTTTTATT
CAAGATGAAG ATGGCTTCGA GTCCATTGAG GTAGAAGTGG TGCAGCGTCA GCGCGGCTTG
AGTTTAGTGC GCGGCGCTGA GCTTGAAAAA GCCCAGCAGG CACAGCTTAA GGTTGTGGTG
GCTGGCGCAT TTTTCTTGGC GTCCGAGCAG GCGAAAGCAG GCTTTGATAT TCATAACCAT
TAA
|
|---|
| Protein sequence | MNSHNHFNAT KSYPVAMSDT AAPDIITSQI TAPEIIAPQI TVPAKRQFTL STLALALCVL
GSAALFTAQP SWAGDDHGSA TQTEQADEHG AQALKLTQVQ QALAGISLLP LSSDSLNIAN
LNLDIRATAT LVVDRDRTAT LAPQLDARVL ARHVVPGQEV KKGEPLLTLG GAAVAQAQAD
YINAAAEWSR VKRMSEGAVS VSRRMQAQVD AELKRAILEA IKMTPTQIRA LESTPEAIGS
YQLLAPIDGR VQQDIAMLGQ VFSAGTPLMQ LTDESYLWVE AQLTPTQTAH ITVGSAALVQ
VGDKTLAGKI IGRSHELDSV TRTEQVLVSM PNPDHVLHAG QFAELYFANT VANSADKAGG
IVLPDAALTR SGDGDWQIFI QDEDGFESIE VEVVQRQRGL SLVRGAELEK AQQAQLKVVV
AGAFFLASEQ AKAGFDIHNH
|
|---|
| |