| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3439 |
|---|
| Symbol | |
|---|
| ID | 5755252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | + |
|---|
| Start bp | 4058526 |
|---|
| End bp | 4059950 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641289781 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_001555861 |
|---|
| Protein GI | 160876545 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000703202 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGA AACTCCATAT CAAGACTTGG GGCTGTCAAA TGAATGAGTA TGACTCATCC
AAGATGGCTG ATCTGTTAGG CGAATACCAA GGTTATACCT TGACTGAAGA AGCGTCTGAG
GCAGACATTC TCCTGCTGAA TACTTGTTCA ATCCGTGAAA AAGCGCAGGA AAAAGTGTTC
CATCAGCTAG GACGCTGGAA GACGCTTAAA GATAAAAATC CTAATTTGAT TATTGGCGTG
GGCGGCTGCG TTGCTTCACA AGAAGGCAAA GCGATTAAAG ACAGAGCCCA ATGTGTCGAC
ATTATTTTTG GCCCACAAAC GTTGCACCGT CTGCCCGAGA TGATCGAGCA AGTGCGCCGT
GGTGACAAAG CGGTTATCGA TATCAGCTTC CCTGAAATCG AAAAATTCGA CCGTCTGCCA
GAGCCCCGAG CCGAAGGCCC AACCGCGTTT GTGTCTATCA TGGAAGGTTG CAGCAAGTAC
TGCTCGTTCT GTGTGGTACC TTATACTCGC GGCGAAGAAG TCAGCCGTCC ATCGGACGAC
ATCATCCTTG AAATCGCCCA ATTGGCGGAG CAAGGTGTGC GCGAAGTGAA CCTGCTAGGC
CAAAACGTGA ATGCCTATCG CGGCGCAACT CACGATGGCG CTATCTGTAC CTTTGCGGAA
TTACTGCGTT TCGTGGCGGC CATCGACGGT ATCGACCGTA TCCGCTTTAC GACCAGTCAC
CCGATTGAAT TTACACAAGA TATTATCGAC GTTTACGAAG ATACCCCAGA GCTAGTGAGC
TTCTTGCACT TGCCAGTACA ATCGGGTTCT GACCGTATTC TCACGGCGAT GAAGCGCGGC
CACATGGCGA TTGAATATAA GTCAATTATC CGCCGCCTGC GTAAAGCCCG TGAAGGCATT
CAAATCAGCT CAGACTTTAT CATTGGCTTC CCAGGCGAAA CCAAAGAAGA CTTTGCCGAT
ACCATGAAAT TAATTGAAGA CATAGGTTTC GACCACAGCT TCAGCTTTAT CTATAGCGCA
CGTCCGGGCA CGCCAGCGGC GGATTTACCC GATAACGTCG ATATGGAAGA GAAAAAGCAA
CGTCTCGCGA TTCTGCAAGA CCGCATCACC CAGCAAGCCA TGCGCTACAG CCGCCACATG
ATGGGCACAG TGCAACGTAT TCTGGTTGAA GGTCCATCGG TGAAAAATCC AATGGAACTG
CGCGGCCGTA CTGAGAACAA CCGAGTGGTG AACTTCGAAG GTCAGCCAAA ACACATTGGT
ACTTTCGTGG ATGTCGAAAT CGTCGACGTA TACACTAACT CACTGCGCGG TGTCTTTATC
CGCGGCGAAG ATGAAATGGA TCTACGTCGT AGCCTGCGTC CGGCTGAAAT TCTGGCCAAG
CGCAAGCAAG ATGATGAACT GGGTGTGACT CAATTTAAGC CATAA
|
|---|
| Protein sequence | MSKKLHIKTW GCQMNEYDSS KMADLLGEYQ GYTLTEEASE ADILLLNTCS IREKAQEKVF
HQLGRWKTLK DKNPNLIIGV GGCVASQEGK AIKDRAQCVD IIFGPQTLHR LPEMIEQVRR
GDKAVIDISF PEIEKFDRLP EPRAEGPTAF VSIMEGCSKY CSFCVVPYTR GEEVSRPSDD
IILEIAQLAE QGVREVNLLG QNVNAYRGAT HDGAICTFAE LLRFVAAIDG IDRIRFTTSH
PIEFTQDIID VYEDTPELVS FLHLPVQSGS DRILTAMKRG HMAIEYKSII RRLRKAREGI
QISSDFIIGF PGETKEDFAD TMKLIEDIGF DHSFSFIYSA RPGTPAADLP DNVDMEEKKQ
RLAILQDRIT QQAMRYSRHM MGTVQRILVE GPSVKNPMEL RGRTENNRVV NFEGQPKHIG
TFVDVEIVDV YTNSLRGVFI RGEDEMDLRR SLRPAEILAK RKQDDELGVT QFKP
|
|---|
| |