Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal195_3428 |
Symbol | secD |
ID | 5755234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS195 |
Kingdom | Bacteria |
Replicon accession | NC_009997 |
Strand | - |
Start bp | 4045758 |
End bp | 4047572 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641289763 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001555850 |
Protein GI | 160876534 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0221166 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000136578 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGGAAAGAA AACCCAATAA ACGGCTGCTA AATCACTATT CAGCTTGGAA ATATATAGTT CTTATCGTCA CCATCATTGT GATGTTATTC AGTGCCTTGC CGACATTTTA TGGTGAGGAT GCCGCGGTGC AAGTGGGCGC TAAGGCGGGG TTAACACTCA CGCCCGTAGC CCTTAGAGAT AAGCTGCAAG CTGAAGGCGT GACGGTAAAA CGCATCGACC AAAAGAATGG TGAAACCCTG ATTGTCCTCG ATGCGGATAA CCAACAAACC TTAGTCAAAA CCTTGGTTTC GTCTATGGTG ACAGAGCCCA AAGAGTTGAC CTTATCCCTT GCCAGTGCCG CGCCGAGTTG GTTGCAAAAC TTAGGTTTTC AGCCGATTAA ACTAGGGCTC GACTTACGTG GTGGGGTGCA GTTTCTACTC GATGTGGATG TTGACCCTGT GTATCAAACT CAGGGTGAGG CGTTAGTTGA TTCGCTACGT CAATTCATTC GTGAGCAGAA GATCCGTGGC GCCAGCGTCT ATTTGGACCA AACTAACCAG TTAAACCTGA CGCTGCCCGA TAATGACGCC CGCGCCGCCG TGCGTCAGAT GATGAAACAG TCCTATCCAA ATTGGCAATT ATCCAATACC GATGGCGCGG GTTTACAGAT TAAGTTGAGC CAAGAGGAAC AAACTAAACT GCGTAATTTG ACTGTGCAGC AAAACCTGCA AGTTATGCGC AGTCGTATTG AAGAACTTGG CATAACAGAA GCCTTAGTAC AGCGCCAAGG CGATCATCGA ATTCGGATTG AGTTGCCTGG CGTGCAAGAT CCTGCAGCCG CGAAAAACGT CATTGGTGCT ACAGCGAGTC TGGCTTTTTT CGAGGTGAAA GAGTCAGGCT CTGTGAATGC CATGGTGCTT AACGATAAGT CGGGTAAGCC TATTTATGTG AGCCGCACGC CTGTGCTGGG TGGCGATCAC ATTGTCGATG CCAGAGCGAG TTTAGGTGAG ATGGGTATGG CCGAGGTAAA CATTAACCTC GACCGTATCG GCGGGCAGAA AATGTCTGAG TTTTCCCGAA CCAATATTGG CAAACCTATG GCGACGTCTT ACAGCGAATA CAGTCGCGAT GAACTAGGTA AGGCTAAGCA AACTCAAGAG ATTATCAGCG TTGCGACCAT TCAATCCCAG CTTGGAGACC GCTTCCGCAT CACTGGCGCT GGCACCTATC AAGAAGCGCA GCAATTAGCC CTGTTACTAA GAGCGGGTTC TATGACGGCG CCAGTGACGA TTGTGGAAGA GCGTACCATT GGCCCGACGT TAGGCGCTGA AAACATTGAA AACGGTTTTG CTGCGCTTGG TCTAGGTATG GGCATTACCT TGTTGTTCAT GGCGCTTTGG TATCGTCGTC TCGGTTGGGT GGCGAATATC GCGCTGATCT CTAACATGGT GATCTTGTTT GGCCTACTGG CGCTTATCCC TGGTGCTGTG CTGACCTTGC CCGGTATTGC TGGCCTAGTG TTAACCGTGG GTATGGCTGT CGATACCAAC GTGCTGATTT TTGAGCGAAT AAAAGACAAG TTAAAAGAAG GTCGCAGCTT TGCGCTGGCA ATTGATACGG GGTTTGATAG TGCGTTTTCG ACCATTTTTG ACGCTAACTT CACCACTATG ATCACGGCTG TCGTGCTGTA TTCCATCGGT AATGGCCCAA TTCAAGGTTT CGCCTTGACC TTAGGTCTAG GTCTGTTGAC CAGCATGTTT ACCGGTATCT TTGCTTCAAG AGCCTTGATT AACTTAGTTT ACGGACGTGA TGCTAGTCGT CATGTGAGGG TATAA
|
Protein sequence | MERKPNKRLL NHYSAWKYIV LIVTIIVMLF SALPTFYGED AAVQVGAKAG LTLTPVALRD KLQAEGVTVK RIDQKNGETL IVLDADNQQT LVKTLVSSMV TEPKELTLSL ASAAPSWLQN LGFQPIKLGL DLRGGVQFLL DVDVDPVYQT QGEALVDSLR QFIREQKIRG ASVYLDQTNQ LNLTLPDNDA RAAVRQMMKQ SYPNWQLSNT DGAGLQIKLS QEEQTKLRNL TVQQNLQVMR SRIEELGITE ALVQRQGDHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAMVL NDKSGKPIYV SRTPVLGGDH IVDARASLGE MGMAEVNINL DRIGGQKMSE FSRTNIGKPM ATSYSEYSRD ELGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA PVTIVEERTI GPTLGAENIE NGFAALGLGM GITLLFMALW YRRLGWVANI ALISNMVILF GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDASR HVRV
|
| |