| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3413 |
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| Symbol | |
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| ID | 5755217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009997 |
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| Strand | + |
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| Start bp | 4028484 |
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| End bp | 4030538 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641289746 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001555835 |
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| Protein GI | 160876519 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.341259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0009308 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAGGCC GTTTTAAGTC ACTGACGTGG AAACAAACTA ACCTAGTCGT ATTTACTGCC
CTATTTTTTG CCATTGCCAT TTTTATTGTT GAAATCGCTT TAGTCGTCGT CTCAACCAAA
CAACAACTCA CGACTACCCA GCAAGAACTC CTTGATTCAG TTGAACAACC CGCAGCAAAT
GCCGTCTGGG CATTGGATGA TAATTTAGCC CGTCAAACCT TAGAAGGTGC CATTAAAGTT
GAACATGTCG GCTCGGCAGT GATCGAGCTG GACGATGGTT CCATGTTTGT GTCAGTCAGC
AATAATAAAA AGAATAACTC GCAGACTTTT ATCAGCTTAA GTAACAAATT ATTTGATGAT
CTTAAAGAAA TCTCTCGCCC GCTGTACCGA CCTTTTTATT TCGAAGGCAC CCAACAACAG
CAACTCATTG GCACATTAAC AGTTTTCTAC GATACCCAAG AGCTGACAAA CACCCTTTTC
TCGCAGTTAA GATTTAGTTT TTTCGCCACA CTTGCCCGCG CACTCTTACT CACCTTAGTG
CTTTCAGTGG TTTTCCATCG CTTCTTAACT CAACCTATCG CCCGTATTAG TGAGGCTATA
GATAAGATTG AACCCGACTC ACCGGACGAA AACCTCTTAC CTATGTCCAA TGCGCATAAG
GATGATGAAC TTGGCCTAGT GACCTCAAAA TTCAACCAAA TTCTTATCCA ATTTAGCCAA
ACCCAATCCA AACTGCGCAA AATGGCGACC CGAGATCCGC TAACGGGTTT ACCGAACCGT
ACACTATTGC TCGAAACCAT CGCAGTCACT ATCCAACGTT CGCGTGTACA CAAGCGCAGC
TTTGCCTTAA TGTTTATCGA CTTAGATCGA TTTAAGAATA TTAACGATTC CCTTGGCCAC
GCATTGGGCG ATCAATTCCT CGCCCGTATC GCCCGTATTC TTGAACGCTT CGTTGGCGAT
AAAGGCACAG TCTCTCGCTT AGGTGGCGAT GAGTTTGTGA TTTTAGCCGA CACAGTACAC
ACCCCAGATC AAGCCGCTGA CTTTGTTGAT AAGTTACTTA TCCAGCTTAA TGTCCCTATC
CAATTAAATG AACATGCGAT TCATCCTGCG GCCTCAATTG GGATATCCAT TTATCCCGAA
GACGGTAACA GCGCAGAAGA TTTGATACGT CATGCCGATA TTGCAATGTA CAGCGCCAAA
GCTGCAGGCT CGAATCAATG GGCCTTCTTT AAACAACAGA TGACAGAACG CGCCGCTGTG
CGTTTACGCA CCGAAGCATC CTTGCATGAT GCGTTAAAAA ACAACGAATT TTTGCTGTAT
TTCCAACCTA AACTCGATCT GCAAACGGGC AAAGTGATTG CTTGTGAAGC TCTGATCCGC
TGGCAAAAAG ACGGCCGACT CATCAGTCCG GTTTCTTTTA TCCCCGTCGC CGAAGAAACG
GGGATCATCA TTCCGATTGG CCGCTGGGTG ATAGAACAAA GTTGCAAAGT CTTAAGGGAG
TGGCAGAAGA AATATAACTA TGCCATCCCG ATTGCGATTA ATGTCGCCTC ACAGCAATTC
GCCGACGCGA GTTTAGTACC CGATATCAAA CAGATGGCAT TACGTTATCA GATCCAACCC
GAACTGCTGG AAATTGAAAT CACTGAAACC TCGCTGATGA ACGACATTGA ACTCGCCATC
GCTAAGCTTG AACAACTTAA ATCAGCAGGA TTTGGCATTG CCGTCGATGA CTTCGGCACC
GGATATTCAT CACTCTCTTA CCTGCGCCAT TTGCCCATTA CCACCATGAA AATCGACCGC
TGTTTCGTGT CCGATTTACC TGGGGATAGC GCAATCGCAT CGACCATTTT GATGTTGGGT
AAGCAGCTTA ATTTGACCAT TGTGGCCGAA GGAATTGAAA ACGAGCAGCA ATTGGATTGG
TTGAAGGAGA ATCAGTGCCA AGTCGGCCAA GGCTTCTATT TTAGCCAACC CCTGCCCCAA
GCGGAATTTG AAGCCCTGTA TATAGCAACA CAGACAGCAA CGATAAGCAC TCTGGATGGC
TTACGTGGAG CTTGA
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| Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVVSTK QQLTTTQQEL LDSVEQPAAN
AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD
LKEISRPLYR PFYFEGTQQQ QLIGTLTVFY DTQELTNTLF SQLRFSFFAT LARALLLTLV
LSVVFHRFLT QPIARISEAI DKIEPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ
TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH
ALGDQFLARI ARILERFVGD KGTVSRLGGD EFVILADTVH TPDQAADFVD KLLIQLNVPI
QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KVIACEALIR WQKDGRLISP VSFIPVAEET
GIIIPIGRWV IEQSCKVLRE WQKKYNYAIP IAINVASQQF ADASLVPDIK QMALRYQIQP
ELLEIEITET SLMNDIELAI AKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKENQCQVGQ GFYFSQPLPQ
AEFEALYIAT QTATISTLDG LRGA
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