| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3363 |
|---|
| Symbol | deoD |
|---|
| ID | 5755167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 3971649 |
|---|
| End bp | 3972359 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641289696 |
|---|
| Product | purine nucleoside phosphorylase |
|---|
| Protein accession | YP_001555785 |
|---|
| Protein GI | 160876469 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0813] Purine-nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00586668 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAC CACACATTAA TGCTGTAGAG GGCGCATTCG CTGAGACAAT GCTGTTTCCA
GGCGATCCAT TACGTGCAAA ATATATTGCT GAAACATTCT TAGAAAATGT TGAGCAAGTG
ACTGATGTTC GAAACATGCT AGGTTTTACT GGTACTTACA AAGGTAAGCG TATTTCAGTT
ATGGGTTCAG GCATGGGTAT TCCTTCATGC TCTATCTATG CAACTGAATT AATTCGTGAT
TACGGCGTTA AAAACCTGAT CCGTGTGGGT ACTTGTGGTG CGATCAGCAC TGACGTTAAA
GTACGTGACG TGATCATTGG TATGGGTGCA TGTACTGACT CAGCGGTTAA CCGTTTACGT
TTCAAAGGCC AAGATTTTGC TGCTATCGCT AACTATGAGC TGATGAATGC GGTTATCGAG
TCTGCGAAAG TTCGTGGTAC TAAAGTTCGC GTAGGTAACA TTTTCTCTGC GGACCTGTTC
TACACTCCTG ATCCACAAAT GTTCGACGTG ATGGAGAAGA TGGGCGTGTT AGGCGTTGAA
ATGGAAGCGG CTGGTCTGTA CGGTGTTGCC CATGAGTTTG GTGCACGTGC CCTGTGTGTT
GTGACTGTAT CTGACCACAT CCGCACCGGT GAAAAGACTT CTGCAGAAGA ACGTCAAACC
ACATTCAATG ACATGATCAT CATGACATTA GAAGCAGCGA TTACACTGTA A
|
|---|
| Protein sequence | MATPHINAVE GAFAETMLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGKRISV
MGSGMGIPSC SIYATELIRD YGVKNLIRVG TCGAISTDVK VRDVIIGMGA CTDSAVNRLR
FKGQDFAAIA NYELMNAVIE SAKVRGTKVR VGNIFSADLF YTPDPQMFDV MEKMGVLGVE
MEAAGLYGVA HEFGARALCV VTVSDHIRTG EKTSAEERQT TFNDMIIMTL EAAITL
|
|---|
| |