| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_3181 |
|---|
| Symbol | |
|---|
| ID | 5754973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 3752938 |
|---|
| End bp | 3754050 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641289502 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_001555603 |
|---|
| Protein GI | 160876287 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000438946 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0177066 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTTC TTCCGTTTTT AAAAGTGATC GTTGAGCGCA AAGCTTCCGA CTTGTTTATC
ACAGCTGGCT TTCCGCCAAG TGCTAAGATT GACGGTGAGT TGCGTCCCTT GGCCGAAAGT
GCCTTTACTC CGGCACAATC ACTGGATTTT GTTGAATCCT TAATGACCGA AGCGCAGAAA
CAAGAGTTTC ATTCGACTCG TGAGTGTAAC TTTGCTTTTG CGGCAAAGGA TTTAGGTCGT
TTTCGGGTGA GTGCATTTTG GCAGCGTGAA TCGCCTGGCT GCGTGATGCG CCGTATCGAA
ACTAAAATCC CTGATGTTGA TGATTTAAAA CTGCCACCCA TTCTGAAAGA TCTGGTGATG
AGTAAACGTG GCCTCATCAT TATGGTGGGC GGAACGGGTA CGGGTAAGTC AACATCTCTG
GCGGCCTTGG TGGGATATCG TAATGGTCAT GCTCGTGGTC ATATTTTGAC TATCGAAGAC
CCAGTCGAAT TCGTTCACGA CCACAGAAAA AGCATTATCA CCCAGCGTGA AGTGGGCATA
GATACTGAAT CTTTCGATGC GGCGCTAAAA AGCTCCCTTC GCCAAGCACC CGATGTGATC
TTGATTGGTG AAATTCGTAC CCAAGAGACG ATGGAGTTCG CCCTGTCGTT TGCGGAAACA
GGCCACCTCT GTATGGCAAC CTTGCATGCC AACAACGCCA ACCAAGCATT AGACCGCATT
ATGCACCTCG TGCCTGAGAG TAAACATCAA CAGTTATTAT TCGATTTGTC ATTGAATTTA
CGCGGGATTG TGGCGCAGCA ATTGATCCCA AAAGTCGATG GCACTGGGCG TCGCGCCGCG
ATTGAAGTAT TGATCAACAC CCCAAGGGTA GCGAGTTTAA TTGCGAAGAA TGAGCTGCAT
TTGCTCAAAG AAACCATGGC CAAATCGAAT GAGCAGGGCA TGCAGACGTT CGATCAAGCC
TTGCTCAAAC TTTATGTCGA TGGCGAGATT AGTTACGCCG ATGCGCTGCA CCATGCTGAT
TCACCTAACG ATTTACGTTT GATGATTAAG TTGCAGAATA AAGAATCCAC GGGCTCAGGT
TTTATGGAAG GTGTCACCTT AGACATGGAC TAA
|
|---|
| Protein sequence | MDVLPFLKVI VERKASDLFI TAGFPPSAKI DGELRPLAES AFTPAQSLDF VESLMTEAQK
QEFHSTRECN FAFAAKDLGR FRVSAFWQRE SPGCVMRRIE TKIPDVDDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNGH ARGHILTIED PVEFVHDHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLIP KVDGTGRRAA IEVLINTPRV ASLIAKNELH
LLKETMAKSN EQGMQTFDQA LLKLYVDGEI SYADALHHAD SPNDLRLMIK LQNKESTGSG
FMEGVTLDMD
|
|---|
| |