| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal195_2938 |
|---|
| Symbol | |
|---|
| ID | 5754716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009997 |
|---|
| Strand | - |
|---|
| Start bp | 3483157 |
|---|
| End bp | 3484440 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641289249 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001555364 |
|---|
| Protein GI | 160876048 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.71109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0696862 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGG CTTCTTCCTC TGCGGCAAGC TTTGCCCAAC TCGGCATTAT TGCACCTTTG
CTAAATCGAT TAACCGAATT AGCGTATGTT TCGCCTACAT CAGTACAGGC GGCGACGATC
CCCGCTGTGC TTGCGGGGCG GGATGTGTTA GCCGGCGCCA ATACGGGCTC GGGTAAAACG
GCAGCCTTTG CCGTGCCGCT GTTGCAGCAA CTTGTTGAAG CAAAAACAGA CGATAAGACA
GGCGCTTATG TTCGTTGTTT GGTCTTAGTA CCCACCCGTG AATTAGCCCA GCAAGTCGCA
GACAGCTTTC TGTCCTATGC CTCGCATTTG AATGGCAAGC TAAAAATCGT TGCCGCGTTT
GGCGGTGTGT CAGTCAATGC GCAAATGCAG AGCCTACGCG CTGGTGCTGA CGTATTAGTG
GCAACGCCGG GTCGTTTGTT AGATCTGTTG TCCAGCAATG CCATCAAACT TAACCGCGTT
AGTGCCTTAG TGCTCGATGA AGCTGACCGT ATGTTAAGCC TTGGTTTTAC AGAAGAATTA
GCCCAAGTGC TCGACGCGTT GCCCGCCAAG AAACAAACCT TATTATTCTC AGCGACATTC
CCAGAAGAAG TCCGTGAATT AACGGCAAAA CTACTGAATG ATCCGCTTGA ATACCAATTT
CAAAGTGAAC AAGAAAGCAC GATTCATCAG CGGGTGATCA CCGTTAATCG TCCGATGAAA
ACCGCATTAT TGGCGCATCT GATTAAAGAA CATCAGTGGT CACAGGCGTT GATTTTTGTG
AGTGCCAAAA ATACCTGTAA TCATTTAGCG CAAAAGTTGT CTAAACGTGG GATCAGTGCC
GAAGTCTTCC ATGGCGATAA AGCCCAAGGC GCACGTACGC GAGTGCTCGA TGGGTTTAAA
AATGGTGAGA TCAGTGTGTT AATCGCCACT GACATTGCCG CCCGTGGTAT CGATATCGAT
AAACTGCCTG TGGTGATCAA CTTTGATTTA CCAAGAAGCC CTGCGGATTA TATGCATCGC
ATTGGCCGTA GTGGCCGCGC CGGTGAAGCT GGCTTAGCTG TGACCTTGAT TTCCCATGAG
GATTATCACC ACTTTGGCGT GATAGAGAAA AAGAACAAGC TTAAGTTAGT GCGTGAGCAA
ATTGTCGGTT TTGAAGCCGA TGACGAAATG CCAGCCGAAC TGTTAGAACA AGCTAAACCT
GTCGCCAAGC CCGAAGGTAC GGGTAAAAAA AAACGTAAAC AGTTACCGCC TGCCAATGCT
GAATTTTGGG GTAAAAAATC TTAA
|
|---|
| Protein sequence | MTQASSSAAS FAQLGIIAPL LNRLTELAYV SPTSVQAATI PAVLAGRDVL AGANTGSGKT
AAFAVPLLQQ LVEAKTDDKT GAYVRCLVLV PTRELAQQVA DSFLSYASHL NGKLKIVAAF
GGVSVNAQMQ SLRAGADVLV ATPGRLLDLL SSNAIKLNRV SALVLDEADR MLSLGFTEEL
AQVLDALPAK KQTLLFSATF PEEVRELTAK LLNDPLEYQF QSEQESTIHQ RVITVNRPMK
TALLAHLIKE HQWSQALIFV SAKNTCNHLA QKLSKRGISA EVFHGDKAQG ARTRVLDGFK
NGEISVLIAT DIAARGIDID KLPVVINFDL PRSPADYMHR IGRSGRAGEA GLAVTLISHE
DYHHFGVIEK KNKLKLVREQ IVGFEADDEM PAELLEQAKP VAKPEGTGKK KRKQLPPANA
EFWGKKS
|
|---|
| |